Tools for Outbreak Investigation/Infectious Disease Surveillance


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Documentation for package ‘ggsurveillance’ version 0.5.1

Help Pages

align_and_bin_dates_seasonal Align dates for seasonal comparison
align_dates_seasonal Align dates for seasonal comparison
bin_by_date Aggregate data by time periods
create_agegroups Create Age Groups from Numeric Values
expand_counts Duplicate rows according to a weighting variable
geometric_mean Compute a Geometric Mean
geom_area_diverging Create diverging bar charts, diverging area charts or other plots for opposing categorical data.
geom_bar_diverging Create diverging bar charts, diverging area charts or other plots for opposing categorical data.
geom_col_range Create a ranged bar chart
geom_epicurve Create an epidemic curve plot or bin/count observations by date periods
geom_epicurve_point Create an epidemic curve plot or bin/count observations by date periods
geom_epicurve_text Create an epidemic curve plot or bin/count observations by date periods
geom_epigantt Epi Gantt Chart: Visualize Epidemiological Time Intervals
geom_hline_year Automatically create lines at the turn of every year
geom_label_last_value Add labels or points to the last value of a line chart
geom_label_last_value, stat_last_value Add labels or points to the last value of a line chart
geom_label_last_value_repel Add labels or points to the last value of a line chart
geom_text_last_value Add labels or points to the last value of a line chart
geom_text_last_value_repel Add labels or points to the last value of a line chart
geom_vline_year Automatically create lines at the turn of every year
guide_axis_nested_date Nested axis guide for date scales
influenza_germany German Influenza (FLU) Surveillance data
label_date Date labeller
label_date_short Date labeller
label_power10 Format numbers as power-of-10 R expressions
label_skip Skip labels on an axis
linelist_hospital_outbreak Line list of a fictional hospital outbreak (Data)
population_german_states Population of the German states (2023)
scale_continuous_diverging Diverging continuous scales for diverging bar charts with symmetrical limits
scale_x_cases_5er Continuous x-axis and y-axis scale for (case) counts
scale_x_continuous_diverging Diverging continuous scales for diverging bar charts with symmetrical limits
scale_x_discrete_reverse Reversed discrete scale for 'ggplot2'
scale_y_cases_5er Continuous x-axis and y-axis scale for (case) counts
scale_y_continuous_diverging Diverging continuous scales for diverging bar charts with symmetrical limits
scale_y_discrete_reverse Reversed discrete scale for 'ggplot2'
StatBinDate Create an epidemic curve plot or bin/count observations by date periods
StatDateCount Create an epidemic curve plot or bin/count observations by date periods
StatEpicurve Create an epidemic curve plot or bin/count observations by date periods
StatLastValue Add labels or points to the last value of a line chart
StatLastValueRepel Add labels or points to the last value of a line chart
stat_bin_date Create an epidemic curve plot or bin/count observations by date periods
stat_date_count Create an epidemic curve plot or bin/count observations by date periods
stat_diverging Create diverging bar charts, diverging area charts or other plots for opposing categorical data.
stat_last_value Add labels or points to the last value of a line chart
theme_mod_disable_legend Quickly adjust the legend position
theme_mod_disable_legend, theme_mod_legend_position Quickly adjust the legend position
theme_mod_legend_bottom Quickly adjust the legend position
theme_mod_legend_left Quickly adjust the legend position
theme_mod_legend_position Quickly adjust the legend position
theme_mod_legend_right Quickly adjust the legend position
theme_mod_legend_top Quickly adjust the legend position
theme_mod_remove_legend_title Quickly adjust the legend position
theme_mod_remove_minor_grid Quickly remove the minor lines of the panel grid
theme_mod_remove_minor_grid_x Quickly remove the minor lines of the panel grid
theme_mod_remove_minor_grid_y Quickly remove the minor lines of the panel grid
theme_mod_remove_panel_grid Quickly remove the minor lines of the panel grid
theme_mod_rotate_axis_labels Rotate axis labels
theme_mod_rotate_x_axis_labels Rotate axis labels
theme_mod_rotate_x_axis_labels_30 Rotate axis labels
theme_mod_rotate_x_axis_labels_45 Rotate axis labels
theme_mod_rotate_x_axis_labels_60 Rotate axis labels
theme_mod_rotate_x_axis_labels_90 Rotate axis labels
theme_mod_rotate_y_axis_labels Rotate axis labels
uncount Duplicate rows according to a weighting variable
uncount, expand_counts Duplicate rows according to a weighting variable