HasSparseHardcalls {pgenlibr} | R Documentation |
Returns whether hardcalls for the variant_numth variant and given allele are represented in a sparse manner that is supported by ReadSparseHardcalls().
Description
Returns whether hardcalls for the variant_numth variant and given allele are represented in a sparse manner that is supported by ReadSparseHardcalls().
Usage
HasSparseHardcalls(pgen, variant_num, allele_num = 2L)
Arguments
pgen |
Object returned by NewPgen(). |
variant_num |
Variant index (1-based). |
allele_num |
Allele index; 1 corresponds to REF, 2 to the first ALT allele, 3 to the second ALT allele if it exists, etc. Optional, defaults to 2. |
Value
True iff the (variant, allele) pair has a sparse representation that can be returned by ReadSparseHardcalls().
[Package pgenlibr version 0.5.3 Index]