read_phy {ggmRSCU}R Documentation

Process PhyloSuite RSCU Data for Visualization

Description

Processes Relative Synonymous Codon Usage (RSCU) data from PhyloSuite CSV files, preparing it for visualization with the 'ggmRSCU' package.

Usage

read_phy(folder_path)

Arguments

folder_path

Path to folder containing CSV files. Files must contain: - 'RSCU' column - Species-reflecting file names - Required columns: AA, Codon, Fill, RSCU

Details

Performs:

Value

Visualization-ready data frame with:

AA

Amino acid code

Codon

RNA triplet

Fill

Position index (1-6)

Species

Organism identifier

RSCU

Normalized usage values

Examples

# Using example data
example_dir <- system.file("extdata", "phy", package = "ggmRSCU")
result <- read_phy(example_dir)
head(result)


[Package ggmRSCU version 0.1.0 Index]