databaseCharacteristics |
Summarise Database Characteristics for OMOP CDM |
mockOmopSketch |
Creates a mock database to test OmopSketch package. |
plotConceptSetCounts |
Plot the concept counts of a summariseConceptSetCounts output. |
plotInObservation |
Create a ggplot2 plot from the output of summariseInObservation(). |
plotObservationPeriod |
Create a plot from the output of summariseObservationPeriod(). |
plotRecordCount |
Create a ggplot of the records' count trend. |
shinyCharacteristics |
Generate an interactive Shiny application that visualises the results obtained from the 'databaseCharacteristics()' function. |
summariseClinicalRecords |
Summarise an omop table from a cdm object. You will obtain information related to the number of records, number of subjects, whether the records are in observation, number of present domains and number of present concepts. |
summariseConceptCounts |
Summarise concept counts in patient-level data. Only concepts recorded during observation period are counted. |
summariseConceptIdCounts |
Summarise concept use in patient-level data. Only concepts recorded during observation period are counted. |
summariseConceptSetCounts |
Summarise concept counts in patient-level data. Only concepts recorded during observation period are counted. |
summariseInObservation |
Summarise the number of people in observation during a specific interval of time. |
summariseMissingData |
Summarise missing data in omop tables |
summariseObservationPeriod |
Summarise the observation period table getting some overall statistics in a summarised_result object. |
summariseOmopSnapshot |
Summarise a cdm_reference object creating a snapshot with the metadata of the cdm_reference object. |
summariseRecordCount |
Summarise record counts of an omop_table using a specific time interval. Only records that fall within the observation period are considered. |
tableClinicalRecords |
Create a visual table from a summariseClinicalRecord() output. |
tableConceptIdCounts |
Create a visual table from a summariseConceptIdCounts() result. |
tableInObservation |
Create a visual table from a summariseInObservation() result. |
tableMissingData |
Create a visual table from a summariseMissingData() result. |
tableObservationPeriod |
Create a visual table from a summariseObservationPeriod() result. |
tableOmopSnapshot |
Create a visual table from a summarise_omop_snapshot result. |
tableRecordCount |
Create a visual table from a summariseRecordCount() result. |
tableTopConceptCounts |
Create a visual table of the most common concepts from 'summariseConceptIdCounts()' output. This function takes a 'summarised_result' object and generates a formatted table highlighting the most frequent concepts. |