adpcr-class {dpcR} | R Documentation |
Class "adpcr"
- end-point array digital PCR experiments
Description
A class specifically designed to contain results from end-point array
digital PCR experiments. Data is represented as matrix, where each column
describes different experiment. Type of data in all columns is specified in
slot "type"
. Inherits from dpcr
.
Details
For more in-depth explanation of digital PCR data structure, see
dpcr
.
Slots
col_names
"character"
vector naming columns in the array.row_names
"character"
vector naming rows in the array.row_id
"integer"
vector providing row indices of all runs.col_id
"integer"
vector providing column indices of all runs.panel_id
"factor"
naming the panel to which experiment belong.
Author(s)
Michal Burdukiewicz.
See Also
Data management: adpcr2panel
, bind_dpcr
,
extract_run
.
Plotting: plot_panel
.
Tests: test_panel
.
Simulation: sim_adpcr
.
Real-time array digital PCR: rtadpcr
.
Droplet digital PCR: dpcr
.
Examples
rand_array <- sim_adpcr(400, 1600, 100, pos_sums = FALSE, n_panels = 5)
one_rand_array <- extract_run(rand_array, 1)
plot_panel(one_rand_array, 40, 40)