augment_linelist {o2ools} | R Documentation |
Append summaries of outbreaker results to a linelist
Description
For each case in linelist
, appends summary statistics of selected parameters
from an outbreaker_chains
object (e.g. infection times, number of generations).
Usage
augment_linelist(
out,
linelist,
params = c("t_inf", "kappa"),
summary_fns = list(mean = function(x) mean(x, na.rm = TRUE), q25 = function(x)
quantile(x, 0.25, na.rm = TRUE), q75 = function(x) quantile(x, 0.75, na.rm = TRUE))
)
Arguments
out |
An |
linelist |
A |
params |
Character vector of parameter prefixes to summarise (e.g. |
summary_fns |
A named list of summary functions. Each function
takes a numeric vector and returns a single value.
Example:
|
Value
The input linelist
, with new columns named
<param>_<fn>
(e.g. t_inf_mean
, kappa_q25
).
Examples
augmented_linelist <- augment_linelist(
out, linelist,
params = c("t_inf", "kappa"),
summary_fns = list(
median = function(x) median(x, na.rm = TRUE),
q25 = function(x) quantile(x, 0.25, na.rm = TRUE),
q75 = function(x) quantile(x, 0.75, na.rm = TRUE)
)
)
[Package o2ools version 0.0.1 Index]