vegan-deprecated-lattice {vegan}R Documentation

Deprecated lattice Functions in vegan

Description

Lattice functions are going to be deprecated and removed from vegan as soon as viable alternatives are available (or if they are unsatisfactory originally).

Usage

  ordicloud(x, data = NULL, formula, display = "sites", choices = 1:3,
    panel = "panel.ordi3d", prepanel = "prepanel.ordi3d", ...)
  ordisplom(x, data = NULL, formula = NULL, display = "sites", choices = 1:3, 
    panel = "panel.ordi", type = "p", ...)
  ordiresids(x, kind = c("residuals", "scale", "qqmath"),
    residuals = "working", type = c("p", "smooth", "g"),
    formula, ...)

Arguments

x, data, formula, display, choices, panel, prepanel, type, ...

Similar parameters as in ordixyplot.

kind

The type of plot: residuals or absolute values of residuals against fitted values, or quantile plot of residuals with qqmath.

residuals

The type of residuals with choices "working", "response", "standardized" and "studentized".

Details

Trellis (or lattice) functions were added to vegan mostly in 2008 to 2009. In that time they were the only alternative of the kind, but now there are better, more versatile and more user-friendly alternatives, mainly in ggplot2. The lattice functions will be removed from vegan as soon as we can propose better modern alternatives.

The following functions are currently deprecated:


[Package vegan version 2.7-1 Index]