read_prot {fibos} | R Documentation |
Read Protein Surface File
Description
Reads and processes data from protein surface files generated by the 'occluded_surface' function. The results enable important analyses of protein behavior at the atomic level.
Arguments
file |
Path or name of protein surface file (.srf). |
Details
The function reads a surface file containing data calculated using the 'OS' or 'FIBOS' methodology. The file should be in the format generated by the 'occluded_surface' function.
Value
A data frame with the following columns:
- ATOM
atomic contact identifiers
- NUMBER_POINTS
number of points (integer) on atomic surface
- AREA
surface area (numeric)
- RAYLENGTH
average ray length (numeric)
- DISTANCE
average distance of contacts (numeric)
Author(s)
Carlos Henrique da Silveira (carlos.silveira@unifei.edu.br)
Herson Hebert Mendes Soares (hersonhebert@hotmail.com)
Joao Paulo Roquim Romanelli (joaoromanelli@unifei.edu.br)
Patrick Fleming (Pat.Fleming@jhu.edu)