ccGenomicIdeogram {circlizePlus} | R Documentation |
Define an ideograms track for genomic graph
Description
Object ccGenomicTrack will call the function circlize::circos.genomicIdeogram while drawing.
Usage
ccGenomicIdeogram(
cytoband = system.file(package = "circlize", "extdata", "cytoBand.txt"),
species = NULL,
track.height = mm_h(2),
track.margin = circos.par("track.margin")
)
Arguments
cytoband |
A data frame or a file path, pass to |
species |
Abbreviations of the genome, pass to |
track.height |
Height of the ideogram track. |
track.margin |
Margins for the track. |
Value
Object ccGenomicTrack
Examples
library(circlizePlus)
cc = ccPlot(initMode = "initializeWithIdeogram",chromosome.index = "chr1", plotType = NULL)
human_cytoband = read.cytoband(species = "hg19")$df
t2=ccGenomicIdeogram(human_cytoband)
cc+t2
circos.clear()
[Package circlizePlus version 0.9.1 Index]