shinyDiagnostics {PhenotypeR} | R Documentation |
Create a shiny app summarising your phenotyping results
Description
A shiny app that is designed for any diagnostics results from phenotypeR, this includes:
* A diagnostics on the database via 'databaseDiagnostics'. * A diagnostics on the cohort_codelist attribute of the cohort via 'codelistDiagnostics'. * A diagnostics on the cohort via 'cohortDiagnostics'. * A diagnostics on the population via 'populationDiagnostics'. * A diagnostics on the matched cohort via 'matchedDiagnostics'.
Usage
shinyDiagnostics(
result,
directory,
minCellCount = 5,
open = rlang::is_interactive()
)
Arguments
result |
A summarised result |
directory |
Directory where to save report |
minCellCount |
Minimum cell count for suppression when exporting results. |
open |
If TRUE, the shiny app will be launched in a new session. If FALSE, the shiny app will be created but not launched. |
Value
A shiny app
Examples
library(PhenotypeR)
cdm <- mockPhenotypeR()
result <- phenotypeDiagnostics(cdm$my_cohort)
shinyDiagnostics(result, tempdir())
CDMConnector::cdmDisconnect(cdm = cdm)
[Package PhenotypeR version 0.1.5 Index]