estimate_payoffs {qvirus}R Documentation

Estimate Payoff Parameters for HIV Phenotype Interactions

Description

This function estimates the payoff parameters for HIV phenotype interactions based on the provided classification object and predictions from a viral load model. It calculates the mean differences in viral loads and CD4 counts, as well as the average payoffs for each classification.

Usage

estimate_payoffs(object, predictions)

Arguments

object

An object of class InteractionClassification containing the data on viral load differences and CD4 counts.

predictions

A data.frame containing predictions of viral loads or CD4 values.

Examples

set.seed(42)
data(cd_3)
cd_data <- cd_3[,-1]
cd_result <- cds_diff(cd_data)
data(vl_3)
vl_data <- vl_3[,-1]
vl_result <- vlogs_diff(vl_data)
result <- InteractionClassification(cd_result = cd_result, vl_result = vl_result)
data(preds)
payoffs_results <- estimate_payoffs(result, preds)

[Package qvirus version 0.0.4 Index]