summariseCohortCodelist {CohortCharacteristics}R Documentation

Summarise the cohort codelist attribute

Description

[Experimental]

Usage

summariseCohortCodelist(cohort, cohortId = NULL)

Arguments

cohort

A cohort_table object.

cohortId

A cohort definition id to restrict by. If NULL, all cohorts will be included.

Value

A summarised_result object with the exported cohort codelist information.

Examples


library(CohortCharacteristics)
library(CDMConnector)
library(duckdb)
library(dplyr, warn.conflicts = FALSE)

dbName <- "GiBleed"
requireEunomia(datasetName = dbName)
con <- dbConnect(drv = duckdb(dbdir = eunomiaDir(datasetName = dbName)))
cdm <- cdmFromCon(con = con, cdmSchema = "main", writeSchema = "main")

cdm <- generateConceptCohortSet(cdm = cdm,
                                conceptSet = list(pharyngitis = 4112343L),
                                name = "my_cohort")

result <- summariseCohortCodelist(cdm$my_cohort)

glimpse(result)

tidy(result)



[Package CohortCharacteristics version 1.0.0 Index]