Local_Regional_Permutations {SpaCCI} | R Documentation |
Perform Local and Regional Permutations
Description
This function performs local and regional permutations on the spatial transcriptomics data.
Usage
Local_Regional_Permutations(
permutationMatrix,
permut_col,
cellPropMatrix,
spotGeneMatrix,
LigandVectorIndex,
ReceptorVectorIndex,
null_expression,
nBoot
)
Arguments
permutationMatrix |
A matrix containing permutations. |
permut_col |
A column matrix of permutations. |
cellPropMatrix |
A matrix of cell type proportions. |
spotGeneMatrix |
A matrix of gene expressions at spots. |
LigandVectorIndex |
A vector of ligand indices. |
ReceptorVectorIndex |
A vector of receptor indices. |
null_expression |
A matrix of null expression values. |
nBoot |
Number of bootstrap iterations. |
Value
A matrix with the results of the local and regional permutations.
[Package SpaCCI version 1.0.4 Index]