GST {pooledpeaks} | R Documentation |
Nei's GST
Description
This function calculates GST (Nei's standard genetic distance) measure from a gene identity matrix.
Usage
GST(J = matrix, pairwise = TRUE)
Arguments
J |
A square matrix representing a gene identity matrix. |
pairwise |
Logical indicating whether to calculate pairwise GST. If set to FALSE, must not contain any missing data. |
Value
If pairwise = TRUE, returns a matrix of pairwise GST values. If pairwise = FALSE, returns the overall GST value.
Examples
gene_identity_matrix <- matrix(c(
0.3164550, 0.2836333, 0.2760485,
0.2836333, 0.3106084, 0.2867215,
0.2760485, 0.2867215, 0.3338663
), nrow = 3, byrow = TRUE,
dimnames = list(paste0("Sample", 1:3), paste0("Sample", 1:3)))
GST(J=gene_identity_matrix, pairwise=TRUE)
GST(J=gene_identity_matrix, pairwise=FALSE)
[Package pooledpeaks version 1.2.2 Index]