TwoLevelGST {pooledpeaks} | R Documentation |
Calculate Two-Level GST
Description
This function calculates two-level GST (Nei's standard gene identity) measure from a gene identity matrix.
Usage
TwoLevelGST(G = matrix)
Arguments
G |
A square matrix representing a gene identity matrix. |
Value
A list containing the components of two-level GST including within-group gene identity, between-group gene identity, and GST values.
Examples
gene_identity_matrix <- matrix(c(
0.3164550, 0.2836333, 0.2760485,
0.2836333, 0.3106084, 0.2867215,
0.2760485, 0.2867215, 0.3338663
), nrow = 3, byrow = TRUE,
dimnames = list(paste0("Sample", 1:3), paste0("Sample", 1:3)))
TwoLevelGST(G=gene_identity_matrix)
[Package pooledpeaks version 1.2.2 Index]