get_comparisons {SkeletalVis} | R Documentation |
Retrieve metadata for the SkeletalVis database
Description
'get_comparisons'Retieves the metadata file containing accession and comparison information for the skeletalvis database.
Usage
get_comparisons(skeletalvis, accession = NULL)
Arguments
skeletalvis |
The path to the SkeletalVis data folder. |
accession |
Optionally an experiment accession number for the experiment of interest to filter the metadata by. |
Value
A dataframe containing metadata.
Examples
# Get the path to the directory with the accessions.txt file
skeletalvis_path <- load_skeletalvis(demo=TRUE)
# Retrieve the metadata
metadata <- get_comparisons(skeletalvis_path)
# View the metadata
head(metadata)
metadata <- get_comparisons(skeletalvis_path, "GSE85761")
[Package SkeletalVis version 0.1.1 Index]