get_comparisons {SkeletalVis}R Documentation

Retrieve metadata for the SkeletalVis database

Description

'get_comparisons'Retieves the metadata file containing accession and comparison information for the skeletalvis database.

Usage

get_comparisons(skeletalvis, accession = NULL)

Arguments

skeletalvis

The path to the SkeletalVis data folder.

accession

Optionally an experiment accession number for the experiment of interest to filter the metadata by.

Value

A dataframe containing metadata.

Examples

# Get the path to the directory with the accessions.txt file
skeletalvis_path <- load_skeletalvis(demo=TRUE)

# Retrieve the metadata
metadata <- get_comparisons(skeletalvis_path)

# View the metadata
head(metadata)

metadata <- get_comparisons(skeletalvis_path, "GSE85761")

[Package SkeletalVis version 0.1.1 Index]