plot_volcano {gimap} | R Documentation |
Volcano plot for GI scores
Description
This plot is meant to be functionally equivalent to Fig 5b (for HeLa, equivalent of Fig 3d for PC9). Volcano plot of target-level GI scores Blue points are synthetic lethal paralog GIs with GI < 0.5 and FDR < 0.1; red points are buffering paralog GIs with GI > 0.25 and FDR < 0.1.
Usage
plot_volcano(gimap_dataset, facet_rep = FALSE)
Arguments
gimap_dataset |
A special dataset structure that is originally setup using 'setup_data()' and has had gi scores calculated with 'calc_gi()'. |
facet_rep |
Should the replicates be wrapped with facet_wrap()? |
Value
A ggplot2 volcano plot of the target level genetic interaction scores.
Examples
gimap_dataset <- get_example_data("gimap") %>%
gimap_filter() %>%
gimap_annotate(cell_line = "HELA") %>%
gimap_normalize(
timepoints = "day"
) %>%
calc_gi()
# To plot results
plot_exp_v_obs_scatter(gimap_dataset)
plot_rank_scatter(gimap_dataset)
plot_volcano(gimap_dataset)
[Package gimap version 1.1.1 Index]