Spectral Network Quantitative Trait Loci (snQTL) Analysis


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Documentation for package ‘snQTL’ version 0.2

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as.tensor Tensor Conversion
BinarySearch Search soft threshold
cs_unfold Tensor Column Space Unfolding
cs_unfold-method Tensor Column Space Unfolding
cs_unfold-methods Tensor Column Space Unfolding
diffnet_to_snQTL_stats Test statistics for snQTL
dim-method Mode Getter for Tensor
dim-methods Mode Getter for Tensor
fold General Folding of Matrix
get_diffnet_from_exp The differential matrix
get_diffnet_list_from_exp Get the list of differential matrix from a list of expression data
kronecker_list List Kronecker Product
l2n L2 norm for vector
Ops-method Conformable elementwise operators for Tensor
Ops-methods Conformable elementwise operators for Tensor
rand_tensor Tensor with Random Entries
rs_unfold Tensor Row Space Unfolding
rs_unfold-method Tensor Row Space Unfolding
rs_unfold-methods Tensor Row Space Unfolding
single_exp_to_snQTL_stats Generate one single snQTL test statistics from expression data
sLME Calculate of sLME for matrices
snQTL_test_corrnet Spectral network quantitative trait loci (snQTL) test
soft Soft threshold
solvePMD Solving symmetric Penalized Matrix Decomposition
SSTD_R1 Sparse Symmetric Tensor Decomposition (SSTD)
symmPMD Symmetric Penalized Matrix Decomposition.
Tensor S4 Class for a Tensor
Tensor-class S4 Class for a Tensor
ttl Tensor Times List
ttm Tensor Matrix Product (m-Mode Product)
unfold Tensor Unfolding
unfold-method Tensor Unfolding
unfold-methods Tensor Unfolding