alleleFreq {nprcgenekeepr} | R Documentation |
Calculates the count of each allele in the provided vector.
Description
Part of Genetic Value Analysis
Usage
alleleFreq(alleles, ids = NULL)
Arguments
alleles |
an integer vector of alleles in the population |
ids |
character vector of IDs indicating to which animal each allele
in |
Details
If ids are provided, the function will only count the unique alleles for an individual (homozygous alleles will be counted as 1).
Value
A data.frame with columns allele
and freq
. This is a
table of allele counts within the population.
Examples
library(nprcgenekeepr)
data("ped1Alleles")
ids <- ped1Alleles$id
alleles <- ped1Alleles[, !(names(ped1Alleles) %in% c("id", "parent"))]
aF <- alleleFreq(alleles[[1]], ids = NULL)
aF[aF$freq >= 10, ]
[Package nprcgenekeepr version 1.0.7 Index]