Read10X_Image {Seurat} | R Documentation |
Load a 10X Genomics Visium Image
Description
Load a 10X Genomics Visium Image
Usage
Read10X_Image(
image.dir,
image.name = "tissue_lowres_image.png",
assay = "Spatial",
slice = "slice1",
filter.matrix = TRUE,
image.type = "VisiumV2"
)
Arguments
image.dir |
Path to directory with 10X Genomics visium image data;
should include files |
image.name |
PNG file to read in |
assay |
Name of associated assay |
slice |
Name for the image, used to populate the instance's key |
filter.matrix |
Filter spot/feature matrix to only include spots that have been determined to be over tissue |
image.type |
Image type to return, one of: "VisiumV1" or "VisiumV2" |
Value
A VisiumV2
object
See Also
[Package Seurat version 5.3.0 Index]