aggregate {SeuratObject} | R Documentation |
Aggregate Molecules into an Expression Matrix
Description
Aggregate Molecules into an Expression Matrix
Usage
## S3 method for class 'FOV'
aggregate(x, by = NULL, set = NULL, drop = TRUE, ...)
## S3 method for class 'Molecules'
aggregate(x, by, drop = TRUE, ...)
Arguments
x |
An object with spatially-resolved molecule information |
by |
Name of a
|
set |
Name of molecule set to aggregate |
drop |
Drop molecules not present in a segmentation; if |
... |
Arguments passed to other methods |
Value
An expression matrix
Progress Updates with progressr
This function uses
progressr to
render status updates and progress bars. To enable progress updates, wrap
the function call in with_progress
or run
handlers(global = TRUE)
before running
this function. For more details about progressr, please read
vignette("progressr-intro")
Parallelization with future
This function uses
future to enable
parallelization. Parallelization strategies can be set using
plan
. Common plans include “sequential
”
for non-parallelized processing or “multisession
” for parallel
evaluation using multiple R sessions; for other plans, see the
“Implemented evaluation strategies” section of
?future::plan
. For a more thorough introduction
to future, see
vignette("future-1-overview")