ifcb_get_ecotaxa_example {iRfcb} | R Documentation |
Get EcoTaxa Column Names
Description
This function reads an example EcoTaxa metadata file included in the iRfcb
package.
Usage
ifcb_get_ecotaxa_example(example = "ifcb")
Arguments
example |
A character string specifying which example EcoTaxa metadata file to load. Options are:
|
Details
This function loads different types of EcoTaxa metadata examples based on the user's need. The examples include a minimal template for manual data entry, as well as fully featured datasets with or without classified objects. The default is an IFCB-specific example, originating from https://github.com/VirginieSonnet/IFCBdatabaseToEcotaxa. The example headers can used when submitting data from Imaging FlowCytobot (IFCB) instruments to EcoTaxa at https://ecotaxa.obs-vlfr.fr/.
Value
A data frame containing EcoTaxa example metadata.
Examples
ecotaxa_example <- ifcb_get_ecotaxa_example()
# Print the first five columns
dplyr::tibble(ecotaxa_example)