find_go_terms {SlideCNA} | R Documentation |
Find and plot top n GO-enriched terms per cluster
Description
This function utilizes cluster-specific DEGs to identify cluster-specifc GO biological processes and plots these if they occur
Usage
find_go_terms(
cluster_markers_obj,
type,
n_terms = 5,
text_size,
title_size,
plot_directory
)
Arguments
cluster_markers_obj |
list object with cluster marker information |
type |
character string that is 'all' if using malignant and normal clusters and 'malig' if just using malignant clusters |
n_terms |
integer of number of top DEGs to plot/use |
text_size |
integer of text size for ggplot |
title_size |
integer of title size for ggplot |
plot_directory |
output plot directory path |
Value
A list object with cluster GO term information en_clone = data.table of cluster GO terms top_en_clone = data.table of just top cluster GO terms
[Package SlideCNA version 0.1.0 Index]