cnv_heatmap {SlideCNA} | R Documentation |
Plot CNV scores on a heat map
Description
This function prepares data for plotting and makes a heat map of CNV scores per bead across all genes
Usage
cnv_heatmap(
cnv_data,
md,
chrom_colors,
hc_function = "ward.D2",
plot_directory
)
Arguments
cnv_data |
list object of cnv data from SlideCNA::prep_cnv_dat() |
md |
data.table of metadata of each bead |
chrom_colors |
vector of colors labeled by which chromosome they correspond to |
hc_function |
character for which hierarchical clustering function to use |
plot_directory |
output plot directory path |
Value
None
[Package SlideCNA version 0.1.0 Index]