make_seurat_annot {SlideCNA}R Documentation

Creation of Seurat object

Description

This function takes in raw counts (and potentially meta data) to make a Seurat object and process it

Usage

make_seurat_annot(
  cb,
  md = NULL,
  seed_FindClusters = 0,
  seed_RunTSNE = 1,
  seed_RunUMAP = 42
)

Arguments

cb

sparse counts matrix (genes x cells/beads)

md

data.frame of meta data for cells/beads if specific annotations known

seed_FindClusters

seed number for FindCLusters

seed_RunTSNE

seed number for RunTSNE

seed_RunUMAP

seed number for RunUMAP

Value

A Seurat object with specific Seurat features run


[Package SlideCNA version 0.1.0 Index]