make_so_bin {SlideCNA}R Documentation

Make a binned version of a Seurat object

Description

Aggregate Seurat object counts by bin to create a new Seurat object with binned beads as units instead of beads

Usage

make_so_bin(so, md, hcl_sub, mal = FALSE)

Arguments

so

Seurat object of beads and their meta data

md

data.frame of metadata for Seurat object

hcl_sub

hierarchical clustering object of cluster assignemnt as outputted from SlideCNA::plot_clones()

mal

TRUE if using malignant beads only

Value

A Seurat object with binned beads as units and corresponding binned metadata


[Package SlideCNA version 0.1.0 Index]