make_so_bin {SlideCNA} | R Documentation |
Make a binned version of a Seurat object
Description
Aggregate Seurat object counts by bin to create a new Seurat object with binned beads as units instead of beads
Usage
make_so_bin(so, md, hcl_sub, mal = FALSE)
Arguments
so |
Seurat object of beads and their meta data |
md |
data.frame of metadata for Seurat object |
hcl_sub |
hierarchical clustering object of cluster assignemnt as outputted from SlideCNA::plot_clones() |
mal |
TRUE if using malignant beads only |
Value
A Seurat object with binned beads as units and corresponding binned metadata
[Package SlideCNA version 0.1.0 Index]