%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  bSi
%global packver   1.0.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.0
Release:          1%{?dist}%{?buildtag}
Summary:          Modeling and Computing Biogenic Silica ('bSi') from Inland and Pelagic Sediments

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-cowplot 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-ggpubr 
Requires:         R-CRAN-cowplot 
Requires:         R-CRAN-tidyr 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-ggpubr 

%description
A collection of integrated tools designed to seamlessly interact with each
other for the analysis of biogenic silica 'bSi' in inland and marine
sediments. These tools share common data representations and follow a
consistent 'API' design. The primary goal of the 'bSi' package is to
simplify the installation process, facilitate data loading, and enable the
analysis of multiple samples for biogenic silica fluxes. This package is
designed to enhance the efficiency and coherence of the entire 'bSi'
analytic workflow, from data loading to model construction and
visualization tailored towards reconstructing productivity in aquatic
ecosystems.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}