segreg_poly {viewpoly} | R Documentation |
Polysomic segregation frequency - Function from MAPpoly
Description
Computes the polysomic segregation frequency given a ploidy level and the dosage of the locus in both parents. It does not consider double reduction.
Usage
segreg_poly(ploidy, d.p1, d.p2)
Arguments
ploidy |
the ploidy level |
d.p1 |
the dosage in parent P |
d.p2 |
the dosage in parent Q |
Value
a vector containing the expected segregation frequency for all possible genotypic classes.
Author(s)
Marcelo Mollinari, mmollin@ncsu.edu
References
Mollinari, M., and Garcia, A. A. F. (2019) Linkage analysis and haplotype phasing in experimental autopolyploid populations with high ploidy level using hidden Markov models, _G3: Genes, Genomes, Genetics_. doi: 10.1534/g3.119.400378
Serang O, Mollinari M, Garcia AAF (2012) Efficient Exact Maximum a Posteriori Computation for Bayesian SNP Genotyping in Polyploids. _PLoS ONE_ 7(2): e30906.
[Package viewpoly version 0.4.1 Index]