codesFromCohort {CodelistGenerator} | R Documentation |
Get concept ids from JSON files containing cohort definitions
Description
Get concept ids from JSON files containing cohort definitions
Usage
codesFromCohort(path, cdm, type = c("codelist"))
Arguments
path |
Path to a file or folder containing JSONs of cohort definitions. |
cdm |
A cdm reference via CDMConnector. |
type |
Can be "codelist", "codelist_with_details" or "concept_set_expression". |
Value
Named list with concept_ids for each concept set.
Examples
cdm <- mockVocabRef("database")
x <- codesFromCohort(cdm = cdm,
path = system.file(package = "CodelistGenerator",
"cohorts_for_mock"))
x
CDMConnector::cdmDisconnect(cdm)
[Package CodelistGenerator version 3.5.0 Index]