prepare_gene_sets {ggpicrust2}R Documentation

Prepare gene sets for GSEA

Description

Prepare gene sets for GSEA

Usage

prepare_gene_sets(pathway_type = "KEGG", organism = "ko")

Arguments

pathway_type

A character string specifying the pathway type: "KEGG", "MetaCyc", or "GO"

organism

A character string specifying the organism (only relevant for KEGG and GO)

Value

A list of pathway gene sets


[Package ggpicrust2 version 2.1.2 Index]