%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  MariNET
%global packver   1.0.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.0
Release:          1%{?dist}%{?buildtag}
Summary:          Build Network Based on Linear Mixed Models from EHRs

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5
Requires:         R-core >= 3.5
BuildArch:        noarch
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-lme4 
BuildRequires:    R-CRAN-qgraph 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-lme4 
Requires:         R-CRAN-qgraph 

%description
Analyzing longitudinal clinical data from Electronic Health Records (EHRs)
using linear mixed models (LMM) and visualizing the results as networks.
It includes functions for fitting LMM, normalizing adjacency matrices, and
comparing networks. The package is designed for researchers in clinical
and biomedical fields who need to model longitudinal data and explore
relationships between variables For more details see Bates et al. (2015)
<doi:10.18637/jss.v067.i01>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}