cal_conn {SiFINeT} | R Documentation |
cal_conn This function calculates the first 3 order connectivities for each gene and returns the list of vectors of connectivities.
Description
cal_conn This function calculates the first 3 order connectivities for each gene and returns the list of vectors of connectivities.
Usage
cal_conn(data, thres = 3, m = 10L, abso = 1L, niter = 100L)
Arguments
data |
Input gene by gene coexpression matrix |
thres |
Gene pairs with coexpression exceed thres would be assigned an edge between them in the coexpression network |
m |
Sample size used for the calculation of 3rd order connectivities |
abso |
Whether to calculate connectivities in absolute network (TRUE) or positive network (FALSE) |
niter |
Number of sample used for the calculation of 3rd order connectivities |
Value
List of connectivities C1, C2, and C3 ' @export
Author(s)
Qi Gao
[Package SiFINeT version 1.13 Index]