A B C D E F G I L M P R S U V W X misc
add_prm_association | Describe parameter associations |
add_relationship | Add relationship(s) to an xpose_set |
add_xpdb | Add one or more 'xpdb' objects to an 'xpose_set' |
as_leveler | Level-defining helper functions |
as_xpdb_x | Convert an object to an 'xpose_data' and 'xp_xtras' object |
as_xp_xtras | Convert an object to an 'xpose_data' and 'xp_xtras' object |
backfill_iofv | Add individual objective function to data |
catdv_vs_dvprobs | Non-simulation based likelihood model diagnostic |
check_levels | Verify validity of level list |
check_xpdb_x | Convert an object to an 'xpose_data' and 'xp_xtras' object |
check_xpose_set | Check an 'xpose_set' object |
check_xpose_set_item | Check an 'xpose_set' object |
check_xp_xtras | Convert an object to an 'xpose_data' and 'xp_xtras' object |
cov_grid | Grid plots |
desc_from_comments | Backfill utility for descriptions |
diagram_lineage | Visualize 'xpose_set' |
diff.xpose_set | Display deltaOFV values across 'xpose_set' |
dofv_vs_id | Individual contributions to dOFV |
drop_prm_association | Describe parameter associations |
duplicated.xpose_set | Check if any xpose_data objects are repeated in xpose_set |
dv_vs_ipred_modavg | Model average plots |
dv_vs_pred_modavg | Model average plots |
eta_grid | Grid plots |
eta_vs_catcov | Eta categorical covariate plots (typical) |
eta_vs_contcov | Eta continuous covariate plots (typical) |
eta_vs_cov_grid | Grid plots |
eta_waterfall | Specific waterfall plots |
expose_param | Expose a model parameter of xpdb objects in an xpose_set |
expose_property | Expose a property of xpdb objects in an xpose_set |
fill_prob_subprob_method | Place .problem, .subprob and .method into environment consistently |
filter.xpose_set | Filtration method for xpose_set |
focused_xpdbs | Focus on an xpdb object in an xpose_set |
focus_function | Focus on an xpdb object in an xpose_set |
focus_qapply | Focus on an xpdb object in an xpose_set |
focus_xpdb | Focus on an xpdb object in an xpose_set |
get_base_model | Base model for 'xpose_set' |
get_index | Get full index for xpose_data data |
get_prm | Access model parameters |
get_prop | Generic function to extract a property from a model summary |
get_shk | Get shrinkage estimates from model summary |
grab_xpose_plot | Grab processed 'xpose_plot' |
group_by_x | Group/ungroup and summarize variables in an xpdb |
iofv_vs_mod | Objective function changes across models |
iofv_waterfall | Specific waterfall plots |
ipred_vs_idv_modavg | Model average plots |
ipred_vs_ipred | Compare model predictions |
irep | Add simulation counter |
is_formula_list | Convenience functions used in package |
is_leveler | Level-defining helper functions |
is_xp_xtras | Basic class checker for 'xp_xtras' |
list_dv_probs | For a categorical DV variable, show associated probabilities |
list_vars | Updates to 'list_vars' |
list_vars.default | Updates to 'list_vars' |
list_vars.xp_xtras | Updates to 'list_vars' |
lvl_bin | Level-defining helper functions |
lvl_inord | Level-defining helper functions |
lvl_sex | Level-defining helper functions |
modavg_xpdb | Create a model-averaged xpose data object |
modify_xpdb | Add, remove or rename variables in an xpdb |
mutate.xpose_set | Mutation method for xpose_set |
mutate_prm | Transform parameter values in place |
mutate_x | Add, remove or rename variables in an xpdb |
pheno_base | An 'xp_xtras' example of a base model |
pheno_final | An 'xp_xtras' example of a final model |
pheno_saem | An 'xp_xtras' example of a final model |
pheno_set | A more complex example of 'xpose_set' object |
pkpd_m3 | An 'xp_xtras' example of an M3 model |
pkpd_m3_df | An 'xp_xtras' example of an M3 model (dataset) |
plotfun_modavg | Model average plots |
pred_vs_idv_modavg | Model average plots |
pred_vs_pred | Compare model predictions |
prm_waterfall | Specific waterfall plots |
proc_levels | Convert levels list into tibble |
pull.xpose_set | Pulling method for xpose_set |
remove_relationship | Add relationship(s) to an xpose_set |
rename.xpose_set | Renaming method for xpose_set |
rename_x | Add, remove or rename variables in an xpdb |
reportable_digits | Reportable digits for model fit |
reshape_set | Convert xpose_set to a nested list. |
select.xpose_set | Selection method for xpose_set |
set_base_model | Base model for 'xpose_set' |
set_dv_probs | Set probability columns for categorical endpoints |
set_index | Get full index for xpose_data data |
set_option | Set an 'xpose' option |
set_prop | Set a summary property |
set_var_levels | Set variable levels |
set_var_types | Set variable types |
set_var_types.default | Set variable types |
set_var_types.xp_xtras | Set variable types |
set_var_types_x | Set variable types |
shark_colors | Change colors of shark plots |
shark_plot | Individual contributions to dOFV |
summarise_xpdb | Group/ungroup and summarize variables in an xpdb |
unfocus_xpdb | Focus on an xpdb object in an xpose_set |
ungroup_x | Group/ungroup and summarize variables in an xpdb |
unreshape_set | Convert xpose_set to a nested list. |
unset_base_model | Base model for 'xpose_set' |
val2lvl | Translate values to levels |
vismodegib | A tibble of mock data used for fitting vismodegib models |
vismo_dtmm | An 'xp_xtras' example of the discrete-time Markov model of categorical vismodegib data |
vismo_pomod | An 'xp_xtras' example of the proportional odds categorical vismodegib model |
wrap_xp_ggally | Ensure consistent style with 'GGally' functions |
xp4_xtra_theme | Updated version of the xpose4 theme |
xpdb_set | An example 'xpose_set' object |
xpdb_x | An example 'xp_xtras' object |
xplot_boxplot | Default xpose boxplot function |
xplot_pairs | Wrapper around ggpairs |
xpose_set | Generate a set of 'xpdb' objects |
xp_var | 'xp_var' Method |
xp_var.default | 'xp_var' Method |
xp_var.xp_xtras | 'xp_var' Method |
xp_xtra_theme | Extra theme defaults |
xset_lineage | Determine lineage within a set |
xset_waterfall | Waterfall plot |
%p% | Binary check if LHS is parent of LHS |