coverage_daggers {Rrepest} | R Documentation |
Dagger or double dagger according to coverage level
Description
Transform coverage columns in Rrepest to dagger and double dagger according to the coverage (cvge) column. Default levels are 75 (dagger) and 50 (double dagger). If coverage is above both levels, no symbol is produced (empty). Used with the coverage o option in Rrepest set to TRUE to produce columns with coverage percentages.
Usage
coverage_daggers(res_df, one_dagger = 75, two_dagger = 50)
Arguments
res_df |
(data frame) Rrepest output with columns for coverage (cvge) |
one_dagger |
(numeric) Level at which the coverage is transformed into a dagger. 75 by default. |
two_dagger |
(numeric) Level at which the coverage is transformed into a double dagger. 50 by default |
Value
Dataframe with daggers or double daggers in coverage column
Examples
coverage_daggers(talis18_tt3g23o_freq, one_dagger = 95, two_dagger = 90)
[Package Rrepest version 1.5.4 Index]