calculate_MS {quicR} | R Documentation |
Calculate Maximum Slope
Description
Uses a sliding window to calculate the slope of real-time reads.
Usage
calculate_MS(data, window = 3, data_is_norm = TRUE)
Arguments
data |
A dataframe containing real-time reads. It is recommended to use a dataframe made from normalize_RFU. |
window |
Integer designating how wide you want the sliding window to be for calculating the moving average slope. |
data_is_norm |
Logical; if FALSE, will make a call to normalize_RFU. |
Value
A dataframe containing the real-time slope values as change in RFU/sec.
Examples
# This test takes >5 sec
file <- system.file(
"extdata/input_files",
file = "rt_data.csv",
package = "quicR"
)
df_ <- read.csv(file, check.names = FALSE)
calculate_MS(df_)
[Package quicR version 2.1.0 Index]