B_to_phylotree {GeRnika} | R Documentation |
Create a Phylotree
object from a B
matrix.
Description
This function creates a Phylotree
class object from a B
matrix.
Usage
B_to_phylotree(B, labels = NA)
Arguments
B |
A square matrix that represents the phylogenetic tree. |
labels |
An optional vector containing the tags of the genes in the phylogenetic tree. |
Value
A Phylotree
class object.
Examples
# Create a B matrix instance
# composed by 10 subpopulations of
# clones
B <- create_instance(
n = 10,
m = 4,
k = 1,
selection = "neutral")$B
# Create a new 'Phylotree' object
# on the basis of the B matrix
phylotree <- B_to_phylotree(B = B)
# Generate the tags for the genes of
# the phyogenetic tree
tags <- LETTERS[1:nrow(B)]
# Create a new 'Phylotree' object
# on the basis of the B matrix and
# the list of tags
phylotree_tags <- B_to_phylotree(
B = B,
labels = tags)
[Package GeRnika version 1.1.0 Index]