%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  mortAAR
%global packver   1.1.8
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.1.8
Release:          1%{?dist}%{?buildtag}
Summary:          Analysis of Archaeological Mortality Data

License:          GPL-3 | file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-stats >= 4.3.1
BuildRequires:    R-methods >= 3.3.3
BuildRequires:    R-CRAN-tibble >= 3.0.3
BuildRequires:    R-CRAN-flexsurv >= 2.2.2
BuildRequires:    R-CRAN-magrittr >= 1.5
BuildRequires:    R-CRAN-reshape2 >= 1.4.2
BuildRequires:    R-CRAN-rlang >= 1.1.1
BuildRequires:    R-CRAN-Rdpack >= 0.4.20
Requires:         R-stats >= 4.3.1
Requires:         R-methods >= 3.3.3
Requires:         R-CRAN-tibble >= 3.0.3
Requires:         R-CRAN-flexsurv >= 2.2.2
Requires:         R-CRAN-magrittr >= 1.5
Requires:         R-CRAN-reshape2 >= 1.4.2
Requires:         R-CRAN-rlang >= 1.1.1
Requires:         R-CRAN-Rdpack >= 0.4.20

%description
A collection of functions for the analysis of archaeological mortality
data (on the topic see e.g. Chamberlain 2006
<https://books.google.de/books?id=nG5FoO_becAC&lpg=PA27&ots=LG0b_xrx6O&dq=life%%20table%%20archaeology&pg=PA27#v=onepage&q&f=false>).
It takes demographic data in different formats and displays the result in
a standard life table as well as plots the relevant indices (percentage of
deaths, survivorship, probability of death, life expectancy, percentage of
population). It also checks for possible biases in the age structure and
applies corrections to life tables.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}