%global __brp_check_rpaths %{nil}
%global packname  survidm
%global packver   1.3.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.3.2
Release:          1%{?dist}%{?buildtag}
Summary:          Inference and Prediction in an Illness-Death Model

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.0.0
Requires:         R-core >= 3.0.0
BuildRequires:    R-CRAN-KernSmooth 
BuildRequires:    R-CRAN-np 
BuildRequires:    R-CRAN-survival 
BuildRequires:    R-CRAN-doParallel 
BuildRequires:    R-parallel 
BuildRequires:    R-CRAN-doRNG 
BuildRequires:    R-CRAN-foreach 
BuildRequires:    R-CRAN-TPmsm 
BuildRequires:    R-CRAN-Rcpp 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-gridExtra 
BuildRequires:    R-CRAN-plotly 
Requires:         R-CRAN-KernSmooth 
Requires:         R-CRAN-np 
Requires:         R-CRAN-survival 
Requires:         R-CRAN-doParallel 
Requires:         R-parallel 
Requires:         R-CRAN-doRNG 
Requires:         R-CRAN-foreach 
Requires:         R-CRAN-TPmsm 
Requires:         R-CRAN-Rcpp 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-gridExtra 
Requires:         R-CRAN-plotly 

%description
Newly developed methods for the estimation of several probabilities in an
illness-death model. The package can be used to obtain nonparametric and
semiparametric estimates for: transition probabilities, occupation
probabilities, cumulative incidence function and the sojourn time
distributions. Additionally, it is possible to fit proportional hazards
regression models in each transition of the Illness-Death Model. Several
auxiliary functions are also provided which can be used for marginal
estimation of the survival functions.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}