%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  whirl
%global packver   0.2.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.2.0
Release:          1%{?dist}%{?buildtag}
Summary:          Log Execution of Scripts

License:          Apache License (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1
Requires:         R-core >= 4.1
BuildArch:        noarch
BuildRequires:    R-CRAN-R6 >= 2.4.0
BuildRequires:    R-CRAN-zephyr >= 0.1.1
BuildRequires:    R-CRAN-callr 
BuildRequires:    R-CRAN-cli 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-jsonlite 
BuildRequires:    R-CRAN-kableExtra 
BuildRequires:    R-CRAN-knitr 
BuildRequires:    R-CRAN-quarto 
BuildRequires:    R-CRAN-reticulate 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-sessioninfo 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-CRAN-unglue 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-withr 
BuildRequires:    R-CRAN-yaml 
Requires:         R-CRAN-R6 >= 2.4.0
Requires:         R-CRAN-zephyr >= 0.1.1
Requires:         R-CRAN-callr 
Requires:         R-CRAN-cli 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-jsonlite 
Requires:         R-CRAN-kableExtra 
Requires:         R-CRAN-knitr 
Requires:         R-CRAN-quarto 
Requires:         R-CRAN-reticulate 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-sessioninfo 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-tidyr 
Requires:         R-CRAN-unglue 
Requires:         R-utils 
Requires:         R-CRAN-withr 
Requires:         R-CRAN-yaml 

%description
Logging of scripts suitable for clinical trials using 'Quarto' to create
nice human readable logs.  'whirl' enables execution of scripts in batch,
while simultaneously creating logs for the execution of each script, and
providing an overview summary log of the entire batch execution.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}