geneSNPcustom {geneNR} | R Documentation |
Identifies Candidate Genes based on identified Single Nucleotide Ploymorphisms (SNPs) from Genome Wide Association Stuides (GWAS) Analysis
Description
Identifies Candidate Genes based on identified Single Nucleotide Ploymorphisms (SNPs) from Genome Wide Association Stuides (GWAS) Analysis
Usage
geneSNPcustom(data_file, crop = "wheat")
Arguments
data_file |
The input data in .csv format. (sample_data_wheat_custom for demo purpose) |
crop |
Either "wheat" or "rice". (default: wheat) |
Value
A data frame containing traits, SNP, gene_id, gene_size, and gene_type.
Examples
load(system.file("extdata", "precomputed_sample_results_custom.rda", package = "geneNR"))
message(sample_results)
result <- geneSNPcustom("sample_data_wheat_custom", crop = "wheat")
[Package geneNR version 2.0.1 Index]