geneQTL {geneNR} | R Documentation |
Identifies Candidate Genes based on identified Quantitative Trati Loci (QTL) analysis
Description
Identifies Candidate Genes based on identified Quantitative Trati Loci (QTL) analysis
Usage
geneQTL(data_file, crop = "wheat")
Arguments
data_file |
The input data in .csv format. (sample_data_wheat_qtl or sample_data_rice_qtl for demo purpose) |
crop |
Either "wheat" or "rice". (by default it will be wheat) |
Value
A data frame containing traits, QTL, gene_id, gene_size, and gene_type.
Examples
load(system.file("extdata", "precomputed_sample_results_qtl.rda", package = "geneNR"))
message(sample_results)
result <- geneQTL("sample_data_wheat_qtl", crop="wheat")
result <- geneQTL("sample_data_rice_qtl", crop="rice")
#result <- geneQTL("your_results.csv", crop="wheat")
[Package geneNR version 2.0.1 Index]