ophA_clusters {geneviewer} | R Documentation |
ophA Gene Cluster from Omphalotus olearius
Description
This dataset represents the ophA gene cluster from Omphalotus olearius and Dendrothele bispora, involved in the production of omphalotin, a cyclic N-methylated peptide.
Usage
ophA_clusters
Format
A data frame with 17 rows and 5 columns:
- name
Gene names. A character vector.
- start
Start positions of the genes. An integer vector.
- end
End positions of the genes. An integer vector.
- class
Classifications of the genes. A character vector indicating the type of protein or function associated with each gene.
- cluster
Cluster identification as a character vector, specifying whether the gene belongs to the ophA or dbophA gene cluster.
References
van der Velden NS et al. Autocatalytic backbone N-methylation in a family of ribosomal peptide natural products. Nat Chem Biol. 2017 Aug;13(8):833-835. doi: 10.1038/nchembio.2393. Epub 2017 Jun 5. PMID: 28581484.