GC_align {geneviewer} | R Documentation |
Align gene clusters
Description
This function aligns clusters based on a specified gene id.
Usage
GC_align(GC_chart, id_column, id, align = "left")
Arguments
GC_chart |
A chart object containing genomic data along with clustering information. |
id_column |
The name of the column that contains the gene identifiers. |
id |
The specific identifier of the gene to be aligned. |
align |
The alignment method for the gene. Valid values are "left", "right", or "center". Defaults to "left". |
Value
The modified 'GC_chart' object with updated genomic coordinates.
Examples
genes_data <- data.frame(
start = c(10, 90, 130, 170, 210),
end = c(40, 120, 160, 200, 240),
name = c('Gene 1', 'Gene 2', 'Gene 3', 'Gene 4', 'Gene 5'),
group = c('A', 'B', 'C', 'C', 'A'),
cluster = c(1, 1, 1, 2, 2)
)
GC_chart(genes_data, group = "group", cluster = "cluster", height = "150px") %>%
GC_align("group", "A", align = "left") %>%
GC_legend(FALSE)
[Package geneviewer version 0.1.10 Index]