classify_doublets {Cleanet} | R Documentation |
Classify doublets (or multiplets) based on component singlets.
Description
Extends a classification of singlets into a classification of doublets.
Usage
classify_doublets(cleanet_res, singlet_clas, max_multi = 4)
Arguments
cleanet_res |
The output of a call to the cleanet function. |
singlet_clas |
An array giving a classification of the singlets, whose length must match the number of singlet events returned in cleanet_res. |
max_multi |
The highest cardinality of a multiplet to be considered. |
Value
An array with the same length as the number of doublets found in cleanet_res, specifying the composition of each doublet.
Examples
path <- system.file("extdata", "df_mdipa.csv", package="Cleanet")
df_mdipa <- read.csv(path, check.names=FALSE)
cols <- c("CD45", "CD123", "CD19", "CD11c", "CD16",
"CD56", "CD294", "CD14", "CD3", "CD20",
"CD66b", "CD38", "HLA-DR", "CD45RA",
"DNA1", "DNA2")
cleanet_res <- cleanet(df_mdipa, cols, cofactor=5)
singlet_clas <- df_mdipa$label[which(cleanet_res$status!="Doublet")]
doublet_clas <- classify_doublets(cleanet_res, singlet_clas)
[Package Cleanet version 1.0.0 Index]