xue_species_similarity {FAVA} | R Documentation |
Species similarity matrix for the species included in xue_microbiome_sample
Description
A similarity matrix, with entry (i,j) corresponding to the pairwise similarity between species i and species j. This similarity matrix was derived from a phylogenetic distance matrix, inferred from the tree xue_species_tree, using the expression s(i,j) = exp(-d(i,j)), where d(i,j) is the phylogenetic distance between species i and j.
Usage
xue_species_similarity
Format
xue_species_similarity
A data frame with 524 rows and 524 columns, each corresponding to one species.
[Package FAVA version 1.0.9 Index]