get_segments {shinyWGD} | R Documentation |
Get Segmented Data from Anchorpoints and Ks Values
Description
This function extracts segmented data from anchorpoints and Ks (synonymous substitution rate) values, based on specified criteria, and writes the results to output files.
Usage
get_segments(
genes_file,
anchors_ks_file,
multiplicons_file,
segmented_file,
segmented_anchorpoints_file,
num_anchors = 10
)
Arguments
genes_file |
A character string specifying the file path for genes information created by i-ADHoRe. |
anchors_ks_file |
A character string specifying the file path for anchorpoints Ks values data. |
multiplicons_file |
A character string specifying the file path for multiplicons information created by i-ADHoRe. |
segmented_file |
A character string specifying the output file path for segmented data. |
segmented_anchorpoints_file |
A character string specifying the output file path for segmented anchorpoints. |
num_anchors |
An integer specifying the minimum number of anchorpoints required. |
Value
NULL (output files are generated with the specified information).
[Package shinyWGD version 1.0.0 Index]