analysisEachCluster {shinyWGD} | R Documentation |
Perform synteny analysis for identified clusters
Description
This function performs synteny analysis for clusters identified by hierarchical clustering.
Usage
analysisEachCluster(
segmented_file,
segmented_anchorpoints_file,
genes_file,
cluster_info_file,
identified_cluster_file,
hcheight = 0.3
)
Arguments
segmented_file |
The path to the segmented chromosome file. |
segmented_anchorpoints_file |
The path to the segmented anchorpoints file. |
genes_file |
genes.txt created by i-ADHoRe. |
cluster_info_file |
The path to the clustering information file. |
identified_cluster_file |
The path to the output file for identified clusters. |
hcheight |
The cutoff height for cluster identification (default: 0.3). |
Value
A list containing information about identified clusters and their p-values.
[Package shinyWGD version 1.0.0 Index]