FitCoupledGrowth {biogrowth}R Documentation

FitCoupledGrowth class

Description

The FitCoupledGrowth class contains a Baranyi model fitted to experimental data considering the coupling between the primary and secondary models. Its constructor is fit_coupled_growth().

It is a subclass of list with the items:

Usage

## S3 method for class 'FitCoupledGrowth'
print(x, ...)

## S3 method for class 'FitCoupledGrowth'
coef(object, ...)

## S3 method for class 'FitCoupledGrowth'
summary(object, ...)

## S3 method for class 'FitCoupledGrowth'
predict(object, newdata = NULL, ...)

## S3 method for class 'FitCoupledGrowth'
residuals(object, ...)

## S3 method for class 'FitCoupledGrowth'
vcov(object, ...)

## S3 method for class 'FitCoupledGrowth'
deviance(object, ...)

## S3 method for class 'FitCoupledGrowth'
fitted(object, ...)

## S3 method for class 'FitCoupledGrowth'
logLik(object, ...)

## S3 method for class 'FitCoupledGrowth'
AIC(object, ..., k = 2)

## S3 method for class 'FitCoupledGrowth'
plot(
  x,
  y = NULL,
  ...,
  line_col = "black",
  line_size = 1,
  line_type = 1,
  point_col = "black",
  point_size = 3,
  point_shape = 16,
  label_y = NULL,
  label_x = NULL
)

Arguments

x

The object of class FitCoupledGrowth to plot.

...

ignored.

object

an instance of FitCoupledGrowth

newdata

tibble (or data.frame) with the conditions for the prediction. If NULL (default), the fitting conditions. For two_steps fits, it must have a column named temp. For one_step, it must have a column named temp and one named time.

k

penalty for the parameters (k=2 by default)

y

ignored

line_col

colour of the line

line_size

size of the line

line_type

type of the line

point_col

colour of the points

point_size

size of the points

point_shape

shape of the point

label_y

label for the y-axis. By default, NULL (default value depending on the mode)

label_x

label for the x-axis. By default, NULL (default value depending on the mode)

Methods (by generic)


[Package biogrowth version 1.0.6 Index]