plotPaintedWhales {evolved} | R Documentation |
Plotting the whale phylogeny and coloring its clades
Description
plotPaintedWhales
plots the phylogeny from Steeman et al (2011), coloring the Dolphins (Delphinidae), porpoises (Phocoenidae), the Mysticetes, the baleen whales (Balaenopteridae), and the Beaked whales (Ziphiidae).
Usage
plotPaintedWhales(
show.legend = TRUE,
direction = "rightwards",
knitr = FALSE,
...
)
Arguments
show.legend |
Logical indicating if clade legend should be shown. |
direction |
Phylogeny plotting direction. Should be set to "rightwards" |
knitr |
Logical indicating if plot is intended to show up in RMarkdown files made by the |
... |
other arguments to be passed to |
Value
The whale phylogeny, with branch lengths being colored by a major whale taxonomic group.
Author(s)
Matheus Januario, Jennifer Auler
References
Steeman, M. E., Hebsgaard, M. B., Fordyce, R. E., Ho, S. Y., Rabosky, D. L., Nielsen, R., ... & Willerslev, E. (2009). Radiation of extant cetaceans driven by restructuring of the oceans. Systematic biology, 58(6), 573-585.
See Also
help page from phytools::plotSimmap
Examples
plotPaintedWhales(knitr = TRUE)