aspatial_siri |
Helper Function for Seasonal SIRI Simulation |
bsl_raster |
Raster of breeding season length for the house finch |
check_aspatial_siri_inputs |
Helper function to check the validity of inputs to the 'siri_model_summer' and 'siri_model_winter' functions. |
check_simulator_inputs |
Helper function to check the validity of inputs to the 'disease_simulator' function. |
DiseaseModel |
R6 class representing a disease model of the _Mycoplasma gallisepticum_ outbreak in _Haemorhous mexicanus_ |
disease_dispersal |
Nested functions for population dispersal in a disease ecology simulation. |
disease_results |
Nested functions for initializing, calculating and collecting disease simulator results. |
disease_simulator |
Stage-based seasonal spatially explicit population-level disease model. |
disease_transformation |
Nested functions for a user-defined transformation of a population affected by a disease outbreak. |
disease_transitions |
Nested functions for stage- and compartment-based population transitions in an outbreak. |
finch_region |
Study region for house finch conjunctivitis simulations |
habitat_suitability |
House finch habitat suitability |
initial_abundance |
Initial house finch abundance |
siri_model_summer |
Simulate a _Mycoplasma gallisepticum_ Outbreak in the Breeding Season |
siri_model_winter |
Simulate a _Mycoplasma gallisepticum_ Outbreak in the Non-Breeding Season |