syntenyPlotteR-package {syntenyPlotteR}R Documentation

syntenyPlotteR: Genome Synteny Visualization

Description

Draw syntenic relationships between genome assemblies. There are 3 functions which take a tab delimited file containing alignment data for syntenic blocks between genomes to produce either a linear alignment plot, an evolution highway style plot, or a painted ideogram representing syntenic relationships. There is also a function to convert alignment data in the DESCHRAMBLER/inferCAR format to the required data structure.

Author(s)

Maintainer: Marta Farre m.farre-belmonte@kent.ac.uk [copyright holder]

Authors:

See Also

Useful links:


[Package syntenyPlotteR version 1.0.0 Index]