treeCompare {RRphylo} | R Documentation |
Visualize the difference between phylogenetic trees
Description
The function scans a pair of phylogenetic trees to find topological differences.
Usage
treeCompare(tree,tree1,focal=NULL,plot=TRUE)
Arguments
tree , tree1 |
a phylogenetic tree. The tree needs not to be ultrametric and fully dichotomous. Generic name and specific epithet must be separated by '_'. |
focal |
a vector of focal species to search on both |
plot |
if |
Value
The function returns a data-frame indicating for each un-matching/focal species its sister species/clades on both trees.
Author(s)
Giorgia Girardi, Silvia Castiglione, Carmela Serio, Antonella Esposito
Examples
## Not run:
DataFelids$tree->treefel
set.seed(22)
drop.tip(treefel,sample(treefel$tip.label,20))->tree.red
swapONE(tree.red,si=0.5)[[1]]->tree.red
sample(tree.red$tip.label,10)->focal.species
treeCompare(treefel,tree.red)->comp
treeCompare(treefel,tree.red,focal=focal.species)->comp1
## End(Not run)
[Package RRphylo version 3.0.0 Index]