%global __brp_check_rpaths %{nil}
%global packname  SEA
%global packver   2.0.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.0.1
Release:          1%{?dist}%{?buildtag}
Summary:          Segregation Analysis

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-shiny 
BuildRequires:    R-CRAN-MASS 
BuildRequires:    R-CRAN-doParallel 
BuildRequires:    R-CRAN-foreach 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-KScorrect 
BuildRequires:    R-utils 
BuildRequires:    R-stats 
BuildRequires:    R-grDevices 
BuildRequires:    R-graphics 
BuildRequires:    R-CRAN-data.table 
Requires:         R-CRAN-shiny 
Requires:         R-CRAN-MASS 
Requires:         R-CRAN-doParallel 
Requires:         R-CRAN-foreach 
Requires:         R-methods 
Requires:         R-CRAN-KScorrect 
Requires:         R-utils 
Requires:         R-stats 
Requires:         R-grDevices 
Requires:         R-graphics 
Requires:         R-CRAN-data.table 

%description
A few major genes and a series of polygene are responsive for each
quantitative trait. Major genes are individually identified while polygene
is collectively detected. This is mixed major genes plus polygene
inheritance analysis or segregation analysis (SEA). In the SEA, phenotypes
from a single or multiple bi-parental segregation populations along with
their parents are used to fit all the possible models and the best model
of the trait for population phenotypic distributions is viewed as the
model of the trait. There are fourteen types of population combinations
available. Zhang Yuan-Ming, Gai Jun-Yi, Yang Yong-Hua (2003,
<doi:10.1017/S0016672303006141>).

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}