%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  RepertoiR
%global packver   0.0.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.0.1
Release:          1%{?dist}%{?buildtag}
Summary:          Repertoire Graphical Visualization

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-circlize 
BuildRequires:    R-grDevices 
BuildRequires:    R-CRAN-igraph 
BuildRequires:    R-CRAN-reshape2 
BuildRequires:    R-CRAN-stringdist 
BuildRequires:    R-CRAN-stringi 
BuildRequires:    R-CRAN-stringr 
Requires:         R-CRAN-circlize 
Requires:         R-grDevices 
Requires:         R-CRAN-igraph 
Requires:         R-CRAN-reshape2 
Requires:         R-CRAN-stringdist 
Requires:         R-CRAN-stringi 
Requires:         R-CRAN-stringr 

%description
Visualization platform for T cell receptor repertoire analysis output
results. It includes comparison of sequence frequency among samples,
network of similar sequences and convergent recombination source between
species. Currently repertoire analysis is in early stage of development
and requires new approaches for repertoire data examination and assessment
as we intend to develop. No publication is available yet (will be
available in the near future), Efroni (2021) <https:>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}