gigwa_get_sequences {QBMS} | R Documentation |
Get the Sequences of the Current Active GIGWA Project
Description
Retrieve the list of sequences (e.g., chromosomes) associated with the currently active project in GIGWA, which has been set using the 'gigwa_set_project()' function.
Usage
gigwa_get_sequences()
Value
A vector of sequence names (e.g., chromosome names) for the selected project.
Author(s)
Khaled Al-Shamaa, k.el-shamaa@cgiar.org
See Also
set_qbms_config
, gigwa_set_project
Examples
if (interactive()) {
set_qbms_config("https://gigwa.southgreen.fr/gigwa/",
time_out = 300, engine = "gigwa", no_auth = TRUE)
gigwa_set_db("Sorghum-JGI_v1")
gigwa_set_project("Nelson_et_al_2011")
chroms <- gigwa_get_sequences()
}
[Package QBMS version 1.5.0 Index]