Warning: Permanently added '34.239.161.170' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8933184-fedora-42-x86_64 --chroot fedora-42-x86_64 Version: 1.3 PID: 31804 Logging PID: 31805 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'bootstrap': 'off', 'build_id': 8933184, 'buildroot_pkgs': [], 'chroot': 'fedora-42-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '31f2f77f255b21face737801c6272404a7715248', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-TDA', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-CRAN-TDA', 'package_version': '1.9.4-1.copr8933184', 'project_dirname': 'cran', 'project_name': 'cran', 'project_owner': 'iucar', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/iucar/cran/fedora-42-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'iucar/cran--iucar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': None, 'submitter': 'iucar', 'tags': [], 'task_id': '8933184-fedora-42-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-TDA /var/lib/copr-rpmbuild/workspace/workdir-my2107w9/R-CRAN-TDA --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-TDA', '/var/lib/copr-rpmbuild/workspace/workdir-my2107w9/R-CRAN-TDA', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-my2107w9/R-CRAN-TDA'... Running: git checkout 31f2f77f255b21face737801c6272404a7715248 -- cmd: ['git', 'checkout', '31f2f77f255b21face737801c6272404a7715248', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-my2107w9/R-CRAN-TDA rc: 0 stdout: stderr: Note: switching to '31f2f77f255b21face737801c6272404a7715248'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 31f2f77 automatic import of R-CRAN-TDA Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-my2107w9/R-CRAN-TDA rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading TDA_1.9.4.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o TDA_1.9.4.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/iucar/cran/R-CRAN-TDA/TDA_1.9.4.tar.gz/md5/36807642c08c13f06b1b723450dbf0f1/TDA_1.9.4.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 2313k 100 2313k 0 0 15.3M 0 --:--:-- --:--:-- --:--:-- 15.3M INFO: Reading stdout from command: md5sum TDA_1.9.4.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-my2107w9/R-CRAN-TDA/R-CRAN-TDA.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-my2107w9/R-CRAN-TDA --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1745150703.065754 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.1 starting (python version = 3.13.0, NVR = mock-6.1-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-my2107w9/R-CRAN-TDA/R-CRAN-TDA.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-my2107w9/R-CRAN-TDA --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1745150703.065754 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-my2107w9/R-CRAN-TDA/R-CRAN-TDA.spec) Config(fedora-42-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.1 INFO: Mock Version: 6.1 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-42-x86_64-1745150703.065754/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.20.1-1.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 python3-dnf-4.23.0-1.fc41.noarch python3-dnf-plugins-core-4.10.1-1.fc41.noarch dnf5-5.2.12.0-2.fc41.x86_64 dnf5-plugins-5.2.12.0-2.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 684.5 KiB/s | 30.1 KiB | 00m00s fedora 100% | 74.7 KiB/s | 28.0 KiB | 00m00s Copr repository 100% | 118.4 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 122.7 MiB/s | 14.0 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.37-1.fc42 fedora 8.2 MiB bzip2 x86_64 1.0.8-20.fc42 fedora 99.3 KiB coreutils x86_64 9.6-2.fc42 fedora 5.5 MiB cpio x86_64 2.15-4.fc42 fedora 1.1 MiB diffutils x86_64 3.12-1.fc42 updates 1.6 MiB fedora-release-common noarch 42-26 updates 20.2 KiB findutils x86_64 1:4.10.0-5.fc42 fedora 1.9 MiB gawk x86_64 5.3.1-1.fc42 fedora 1.7 MiB glibc-minimal-langpack x86_64 2.41-3.fc42 updates 0.0 B grep x86_64 3.11-10.fc42 fedora 1.0 MiB gzip x86_64 1.13-3.fc42 fedora 392.9 KiB info x86_64 7.2-3.fc42 fedora 357.9 KiB patch x86_64 2.8-1.fc42 updates 222.8 KiB redhat-rpm-config noarch 342-4.fc42 updates 185.5 KiB rpm-build x86_64 4.20.1-1.fc42 fedora 168.7 KiB sed x86_64 4.9-4.fc42 fedora 857.3 KiB shadow-utils x86_64 2:4.17.4-1.fc42 fedora 4.0 MiB tar x86_64 2:1.35-5.fc42 fedora 3.0 MiB unzip x86_64 6.0-66.fc42 fedora 390.3 KiB util-linux x86_64 2.40.4-7.fc42 fedora 3.4 MiB which x86_64 2.23-1.fc42 fedora 83.4 KiB xz x86_64 1:5.6.3-3.fc42 fedora 1.2 MiB Installing dependencies: add-determinism x86_64 0.6.0-1.fc42 fedora 2.5 MiB alternatives x86_64 1.32-1.fc42 fedora 62.2 KiB ansible-srpm-macros noarch 1-17.1.fc42 fedora 35.7 KiB audit-libs x86_64 4.0.3-2.fc42 fedora 351.3 KiB basesystem noarch 11-22.fc42 fedora 0.0 B binutils x86_64 2.44-3.fc42 fedora 25.9 MiB build-reproducibility-srpm-macros noarch 0.6.0-1.fc42 fedora 735.0 B bzip2-libs x86_64 1.0.8-20.fc42 fedora 84.6 KiB ca-certificates noarch 2024.2.69_v8.0.401-6.fc42 updates 2.6 MiB coreutils-common x86_64 9.6-2.fc42 fedora 11.1 MiB crypto-policies noarch 20250214-1.gitff7551b.fc42 fedora 137.2 KiB curl x86_64 8.11.1-4.fc42 fedora 450.6 KiB cyrus-sasl-lib x86_64 2.1.28-30.fc42 fedora 2.3 MiB debugedit x86_64 5.1-5.fc42 fedora 192.7 KiB dwz x86_64 0.15-9.fc42 fedora 291.0 KiB ed x86_64 1.21-2.fc42 fedora 146.5 KiB efi-srpm-macros noarch 6-2.fc42 fedora 40.1 KiB elfutils x86_64 0.192-9.fc42 fedora 2.6 MiB elfutils-debuginfod-client x86_64 0.192-9.fc42 fedora 79.9 KiB elfutils-default-yama-scope noarch 0.192-9.fc42 fedora 1.8 KiB elfutils-libelf x86_64 0.192-9.fc42 fedora 1.2 MiB elfutils-libs x86_64 0.192-9.fc42 fedora 667.0 KiB fedora-gpg-keys noarch 42-1 fedora 128.2 KiB fedora-release noarch 42-26 updates 0.0 B fedora-release-identity-basic noarch 42-26 updates 674.0 B fedora-repos noarch 42-1 fedora 4.9 KiB file x86_64 5.46-1.fc42 fedora 100.2 KiB file-libs x86_64 5.46-1.fc42 fedora 11.9 MiB filesystem x86_64 3.18-36.fc42 fedora 112.0 B filesystem-srpm-macros noarch 3.18-36.fc42 fedora 38.2 KiB fonts-srpm-macros noarch 1:2.0.5-21.fc42 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-2.fc42 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-14.fc42 fedora 144.0 B gdb-minimal x86_64 16.2-3.fc42 fedora 13.2 MiB gdbm-libs x86_64 1:1.23-9.fc42 fedora 129.9 KiB ghc-srpm-macros noarch 1.9.2-2.fc42 fedora 779.0 B glibc x86_64 2.41-3.fc42 updates 6.6 MiB glibc-common x86_64 2.41-3.fc42 updates 1.0 MiB glibc-gconv-extra x86_64 2.41-3.fc42 updates 7.2 MiB gmp x86_64 1:6.3.0-4.fc42 fedora 811.3 KiB gnat-srpm-macros noarch 6-7.fc42 fedora 1.0 KiB go-srpm-macros noarch 3.6.0-6.fc42 fedora 60.8 KiB jansson x86_64 2.14-2.fc42 fedora 93.1 KiB json-c x86_64 0.18-2.fc42 fedora 86.7 KiB kernel-srpm-macros noarch 1.0-25.fc42 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-5.fc42 fedora 58.3 KiB krb5-libs x86_64 1.21.3-5.fc42 fedora 2.3 MiB libacl x86_64 2.3.2-3.fc42 fedora 38.3 KiB libarchive x86_64 3.7.7-4.fc42 fedora 930.6 KiB libattr x86_64 2.5.2-5.fc42 fedora 27.1 KiB libblkid x86_64 2.40.4-7.fc42 fedora 262.4 KiB libbrotli x86_64 1.1.0-6.fc42 fedora 841.3 KiB libcap x86_64 2.73-2.fc42 fedora 207.1 KiB libcap-ng x86_64 0.8.5-4.fc42 fedora 72.9 KiB libcom_err x86_64 1.47.2-3.fc42 fedora 67.1 KiB libcurl x86_64 8.11.1-4.fc42 fedora 842.1 KiB libeconf x86_64 0.7.6-1.fc42 fedora 64.6 KiB libevent x86_64 2.1.12-15.fc42 fedora 903.1 KiB libfdisk x86_64 2.40.4-7.fc42 fedora 372.3 KiB libffi x86_64 3.4.6-5.fc42 fedora 82.3 KiB libgcc x86_64 15.0.1-0.11.fc42 fedora 266.6 KiB libgomp x86_64 15.0.1-0.11.fc42 fedora 537.6 KiB libidn2 x86_64 2.3.8-1.fc42 fedora 556.5 KiB libmount x86_64 2.40.4-7.fc42 fedora 356.3 KiB libnghttp2 x86_64 1.64.0-3.fc42 fedora 170.4 KiB libpkgconf x86_64 2.3.0-2.fc42 fedora 78.1 KiB libpsl x86_64 0.21.5-5.fc42 fedora 76.4 KiB libselinux x86_64 3.8-1.fc42 fedora 193.1 KiB libsemanage x86_64 3.8-1.fc42 fedora 308.4 KiB libsepol x86_64 3.8-1.fc42 fedora 826.0 KiB libsmartcols x86_64 2.40.4-7.fc42 fedora 180.4 KiB libssh x86_64 0.11.1-4.fc42 fedora 565.5 KiB libssh-config noarch 0.11.1-4.fc42 fedora 277.0 B libstdc++ x86_64 15.0.1-0.11.fc42 fedora 2.8 MiB libtasn1 x86_64 4.20.0-1.fc42 fedora 176.3 KiB libtool-ltdl x86_64 2.5.4-4.fc42 fedora 70.1 KiB libunistring x86_64 1.1-9.fc42 fedora 1.7 MiB libuuid x86_64 2.40.4-7.fc42 fedora 37.3 KiB libverto x86_64 0.3.2-10.fc42 fedora 25.4 KiB libxcrypt x86_64 4.4.38-7.fc42 updates 284.5 KiB libxml2 x86_64 2.12.10-1.fc42 fedora 1.7 MiB libzstd x86_64 1.5.7-1.fc42 fedora 807.8 KiB lua-libs x86_64 5.4.7-3.fc42 fedora 280.8 KiB lua-srpm-macros noarch 1-15.fc42 fedora 1.3 KiB lz4-libs x86_64 1.10.0-2.fc42 fedora 157.4 KiB mpfr x86_64 4.2.2-1.fc42 fedora 828.8 KiB ncurses-base noarch 6.5-5.20250125.fc42 fedora 326.8 KiB ncurses-libs x86_64 6.5-5.20250125.fc42 fedora 946.3 KiB ocaml-srpm-macros noarch 10-4.fc42 fedora 1.9 KiB openblas-srpm-macros noarch 2-19.fc42 fedora 112.0 B openldap x86_64 2.6.9-3.fc42 fedora 655.1 KiB openssl-libs x86_64 1:3.2.4-3.fc42 fedora 7.8 MiB p11-kit x86_64 0.25.5-5.fc42 fedora 2.2 MiB p11-kit-trust x86_64 0.25.5-5.fc42 fedora 395.5 KiB package-notes-srpm-macros noarch 0.5-13.fc42 fedora 1.6 KiB pam-libs x86_64 1.7.0-4.fc42 fedora 126.7 KiB pcre2 x86_64 10.45-1.fc42 fedora 697.7 KiB pcre2-syntax noarch 10.45-1.fc42 fedora 273.9 KiB perl-srpm-macros noarch 1-57.fc42 fedora 861.0 B pkgconf x86_64 2.3.0-2.fc42 fedora 88.5 KiB pkgconf-m4 noarch 2.3.0-2.fc42 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-2.fc42 fedora 989.0 B popt x86_64 1.19-8.fc42 fedora 132.8 KiB publicsuffix-list-dafsa noarch 20250116-1.fc42 fedora 68.5 KiB pyproject-srpm-macros noarch 1.18.1-1.fc42 fedora 1.9 KiB python-srpm-macros noarch 3.13-4.fc42 fedora 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 fedora 500.0 B qt6-srpm-macros noarch 6.9.0-2.fc42 updates 464.0 B readline x86_64 8.2-13.fc42 fedora 485.0 KiB rpm x86_64 4.20.1-1.fc42 fedora 3.1 MiB rpm-build-libs x86_64 4.20.1-1.fc42 fedora 206.6 KiB rpm-libs x86_64 4.20.1-1.fc42 fedora 721.8 KiB rpm-sequoia x86_64 1.7.0-5.fc42 fedora 2.4 MiB rust-srpm-macros noarch 26.3-4.fc42 fedora 4.8 KiB setup noarch 2.15.0-13.fc42 fedora 720.9 KiB sqlite-libs x86_64 3.47.2-2.fc42 fedora 1.5 MiB systemd-libs x86_64 257.5-2.fc42 updates 2.2 MiB systemd-standalone-sysusers x86_64 257.5-2.fc42 updates 277.3 KiB tree-sitter-srpm-macros noarch 0.1.0-8.fc42 fedora 6.5 KiB util-linux-core x86_64 2.40.4-7.fc42 fedora 1.4 MiB xxhash-libs x86_64 0.8.3-2.fc42 fedora 90.2 KiB xz-libs x86_64 1:5.6.3-3.fc42 fedora 218.3 KiB zig-srpm-macros noarch 1-4.fc42 fedora 1.1 KiB zip x86_64 3.0-43.fc42 fedora 698.5 KiB zlib-ng-compat x86_64 2.2.4-3.fc42 fedora 137.6 KiB zstd x86_64 1.5.7-1.fc42 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 148 packages Total size of inbound packages is 52 MiB. Need to download 0 B. After this operation, 176 MiB extra will be used (install 176 MiB, remove 0 B). [ 1/148] tar-2:1.35-5.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 2/148] bzip2-0:1.0.8-20.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 3/148] rpm-build-0:4.20.1-1.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 4/148] unzip-0:6.0-66.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 5/148] cpio-0:2.15-4.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 6/148] which-0:2.23-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 7/148] bash-0:5.2.37-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 8/148] coreutils-0:9.6-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 9/148] grep-0:3.11-10.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 10/148] sed-0:4.9-4.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 11/148] shadow-utils-2:4.17.4-1.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 12/148] findutils-1:4.10.0-5.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 13/148] gzip-0:1.13-3.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 14/148] info-0:7.2-3.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 15/148] xz-1:5.6.3-3.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 16/148] redhat-rpm-config-0:342-4.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 17/148] patch-0:2.8-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 18/148] util-linux-0:2.40.4-7.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 19/148] diffutils-0:3.12-1.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 20/148] fedora-release-common-0:42-26 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 21/148] gawk-0:5.3.1-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 22/148] glibc-minimal-langpack-0:2.41 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 23/148] libacl-0:2.3.2-3.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 24/148] libselinux-0:3.8-1.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 25/148] bzip2-libs-0:1.0.8-20.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 26/148] debugedit-0:5.1-5.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 27/148] elfutils-0:0.192-9.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 28/148] elfutils-libelf-0:0.192-9.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 29/148] file-0:5.46-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 30/148] libarchive-0:3.7.7-4.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 31/148] popt-0:1.19-8.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 32/148] readline-0:8.2-13.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 33/148] rpm-0:4.20.1-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 34/148] rpm-build-libs-0:4.20.1-1.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 35/148] rpm-libs-0:4.20.1-1.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 36/148] zstd-0:1.5.7-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 37/148] filesystem-0:3.18-36.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 38/148] ncurses-libs-0:6.5-5.20250125 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 39/148] coreutils-common-0:9.6-2.fc42 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 40/148] gmp-1:6.3.0-4.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 41/148] libattr-0:2.5.2-5.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 42/148] libcap-0:2.73-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 43/148] openssl-libs-1:3.2.4-3.fc42.x 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 44/148] pcre2-0:10.45-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 45/148] audit-libs-0:4.0.3-2.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 46/148] libeconf-0:0.7.6-1.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 47/148] libsemanage-0:3.8-1.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 48/148] pam-libs-0:1.7.0-4.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 49/148] setup-0:2.15.0-13.fc42.noarch 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 50/148] xz-libs-1:5.6.3-3.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 51/148] ansible-srpm-macros-0:1-17.1. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 52/148] build-reproducibility-srpm-ma 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 53/148] dwz-0:0.15-9.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 54/148] efi-srpm-macros-0:6-2.fc42.no 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 55/148] filesystem-srpm-macros-0:3.18 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 56/148] fonts-srpm-macros-1:2.0.5-21. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 57/148] forge-srpm-macros-0:0.4.0-2.f 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 58/148] fpc-srpm-macros-0:1.3-14.fc42 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 59/148] ghc-srpm-macros-0:1.9.2-2.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 60/148] gnat-srpm-macros-0:6-7.fc42.n 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 61/148] go-srpm-macros-0:3.6.0-6.fc42 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 62/148] kernel-srpm-macros-0:1.0-25.f 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 63/148] lua-srpm-macros-0:1-15.fc42.n 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 64/148] ocaml-srpm-macros-0:10-4.fc42 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 65/148] openblas-srpm-macros-0:2-19.f 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 66/148] package-notes-srpm-macros-0:0 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 67/148] perl-srpm-macros-0:1-57.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 68/148] pyproject-srpm-macros-0:1.18. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 69/148] python-srpm-macros-0:3.13-4.f 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 70/148] qt5-srpm-macros-0:5.15.15-1.f 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 71/148] rust-srpm-macros-0:26.3-4.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 72/148] tree-sitter-srpm-macros-0:0.1 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 73/148] zig-srpm-macros-0:1-4.fc42.no 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 74/148] zip-0:3.0-43.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 75/148] ed-0:1.21-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 76/148] libblkid-0:2.40.4-7.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 77/148] libcap-ng-0:0.8.5-4.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 78/148] libfdisk-0:2.40.4-7.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 79/148] libmount-0:2.40.4-7.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 80/148] libsmartcols-0:2.40.4-7.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 81/148] libuuid-0:2.40.4-7.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 82/148] util-linux-core-0:2.40.4-7.fc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 83/148] zlib-ng-compat-0:2.2.4-3.fc42 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 84/148] fedora-repos-0:42-1.noarch 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 85/148] mpfr-0:4.2.2-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 86/148] glibc-common-0:2.41-3.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 87/148] libsepol-0:3.8-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 88/148] elfutils-libs-0:0.192-9.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 89/148] elfutils-debuginfod-client-0: 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 90/148] libgcc-0:15.0.1-0.11.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 91/148] libstdc++-0:15.0.1-0.11.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 92/148] libzstd-0:1.5.7-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 93/148] file-libs-0:5.46-1.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 94/148] libxml2-0:2.12.10-1.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 95/148] lz4-libs-0:1.10.0-2.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 96/148] curl-0:8.11.1-4.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 97/148] libgomp-0:15.0.1-0.11.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 98/148] lua-libs-0:5.4.7-3.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 99/148] rpm-sequoia-0:1.7.0-5.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [100/148] sqlite-libs-0:3.47.2-2.fc42.x 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [101/148] ncurses-base-0:6.5-5.20250125 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [102/148] crypto-policies-0:20250214-1. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [103/148] pcre2-syntax-0:10.45-1.fc42.n 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [104/148] add-determinism-0:0.6.0-1.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [105/148] fedora-gpg-keys-0:42-1.noarch 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [106/148] elfutils-default-yama-scope-0 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [107/148] json-c-0:0.18-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [108/148] glibc-0:2.41-3.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [109/148] glibc-gconv-extra-0:2.41-3.fc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [110/148] basesystem-0:11-22.fc42.noarc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [111/148] libxcrypt-0:4.4.38-7.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [112/148] systemd-libs-0:257.5-2.fc42.x 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [113/148] binutils-0:2.44-3.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [114/148] alternatives-0:1.32-1.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [115/148] jansson-0:2.14-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [116/148] pkgconf-pkg-config-0:2.3.0-2. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [117/148] pkgconf-0:2.3.0-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [118/148] pkgconf-m4-0:2.3.0-2.fc42.noa 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [119/148] libpkgconf-0:2.3.0-2.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [120/148] ca-certificates-0:2024.2.69_v 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [121/148] qt6-srpm-macros-0:6.9.0-2.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [122/148] libffi-0:3.4.6-5.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [123/148] p11-kit-0:0.25.5-5.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [124/148] libtasn1-0:4.20.0-1.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [125/148] p11-kit-trust-0:0.25.5-5.fc42 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [126/148] fedora-release-0:42-26.noarch 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [127/148] systemd-standalone-sysusers-0 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [128/148] gdb-minimal-0:16.2-3.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [129/148] xxhash-libs-0:0.8.3-2.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [130/148] libcurl-0:8.11.1-4.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [131/148] krb5-libs-0:1.21.3-5.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [132/148] libbrotli-0:1.1.0-6.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [133/148] libidn2-0:2.3.8-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [134/148] libnghttp2-0:1.64.0-3.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [135/148] libpsl-0:0.21.5-5.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [136/148] libssh-0:0.11.1-4.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [137/148] openldap-0:2.6.9-3.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [138/148] keyutils-libs-0:1.6.3-5.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [139/148] libcom_err-0:1.47.2-3.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [140/148] libverto-0:0.3.2-10.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [141/148] libunistring-0:1.1-9.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [142/148] publicsuffix-list-dafsa-0:202 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [143/148] libssh-config-0:0.11.1-4.fc42 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [144/148] cyrus-sasl-lib-0:2.1.28-30.fc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [145/148] libevent-0:2.1.12-15.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [146/148] libtool-ltdl-0:2.5.4-4.fc42.x 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [147/148] gdbm-libs-1:1.23-9.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [148/148] fedora-release-identity-basic 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [148/148] Total 100% | 0.0 B/s | 0.0 B | 00m00s Running transaction Importing OpenPGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. [ 1/150] Verify package files 100% | 865.0 B/s | 148.0 B | 00m00s [ 2/150] Prepare transaction 100% | 4.0 KiB/s | 148.0 B | 00m00s [ 3/150] Installing libgcc-0:15.0.1-0. 100% | 262.0 MiB/s | 268.3 KiB | 00m00s [ 4/150] Installing fedora-release-ide 100% | 0.0 B/s | 932.0 B | 00m00s [ 5/150] Installing fedora-gpg-keys-0: 100% | 42.7 MiB/s | 174.8 KiB | 00m00s [ 6/150] Installing fedora-repos-0:42- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 7/150] Installing fedora-release-com 100% | 23.9 MiB/s | 24.5 KiB | 00m00s [ 8/150] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 9/150] Installing setup-0:2.15.0-13. 100% | 54.6 MiB/s | 726.7 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 10/150] Installing filesystem-0:3.18- 100% | 2.7 MiB/s | 212.4 KiB | 00m00s [ 11/150] Installing basesystem-0:11-22 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/150] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 13/150] Installing publicsuffix-list- 100% | 0.0 B/s | 69.2 KiB | 00m00s [ 14/150] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 740.0 B | 00m00s [ 15/150] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [ 16/150] Installing pcre2-syntax-0:10. 100% | 269.9 MiB/s | 276.4 KiB | 00m00s [ 17/150] Installing ncurses-base-0:6.5 100% | 86.0 MiB/s | 352.2 KiB | 00m00s [ 18/150] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 19/150] Installing ncurses-libs-0:6.5 100% | 232.6 MiB/s | 952.8 KiB | 00m00s [ 20/150] Installing glibc-0:2.41-3.fc4 100% | 201.4 MiB/s | 6.6 MiB | 00m00s [ 21/150] Installing bash-0:5.2.37-1.fc 100% | 272.3 MiB/s | 8.2 MiB | 00m00s [ 22/150] Installing glibc-common-0:2.4 100% | 63.8 MiB/s | 1.0 MiB | 00m00s [ 23/150] Installing glibc-gconv-extra- 100% | 261.1 MiB/s | 7.3 MiB | 00m00s [ 24/150] Installing zlib-ng-compat-0:2 100% | 135.2 MiB/s | 138.4 KiB | 00m00s [ 25/150] Installing bzip2-libs-0:1.0.8 100% | 0.0 B/s | 85.7 KiB | 00m00s [ 26/150] Installing xz-libs-1:5.6.3-3. 100% | 214.3 MiB/s | 219.4 KiB | 00m00s [ 27/150] Installing libuuid-0:2.40.4-7 100% | 0.0 B/s | 38.4 KiB | 00m00s [ 28/150] Installing libblkid-0:2.40.4- 100% | 257.4 MiB/s | 263.5 KiB | 00m00s [ 29/150] Installing popt-0:1.19-8.fc42 100% | 68.1 MiB/s | 139.4 KiB | 00m00s [ 30/150] Installing readline-0:8.2-13. 100% | 475.7 MiB/s | 487.1 KiB | 00m00s [ 31/150] Installing gmp-1:6.3.0-4.fc42 100% | 397.2 MiB/s | 813.5 KiB | 00m00s [ 32/150] Installing libstdc++-0:15.0.1 100% | 405.2 MiB/s | 2.8 MiB | 00m00s [ 33/150] Installing libzstd-0:1.5.7-1. 100% | 395.1 MiB/s | 809.1 KiB | 00m00s [ 34/150] Installing elfutils-libelf-0: 100% | 388.7 MiB/s | 1.2 MiB | 00m00s [ 35/150] Installing libxcrypt-0:4.4.38 100% | 280.4 MiB/s | 287.2 KiB | 00m00s [ 36/150] Installing libattr-0:2.5.2-5. 100% | 0.0 B/s | 28.1 KiB | 00m00s [ 37/150] Installing libacl-0:2.3.2-3.f 100% | 0.0 B/s | 39.2 KiB | 00m00s [ 38/150] Installing dwz-0:0.15-9.fc42. 100% | 23.8 MiB/s | 292.4 KiB | 00m00s [ 39/150] Installing mpfr-0:4.2.2-1.fc4 100% | 270.3 MiB/s | 830.4 KiB | 00m00s [ 40/150] Installing gawk-0:5.3.1-1.fc4 100% | 99.7 MiB/s | 1.7 MiB | 00m00s [ 41/150] Installing unzip-0:6.0-66.fc4 100% | 32.0 MiB/s | 393.8 KiB | 00m00s [ 42/150] Installing file-libs-0:5.46-1 100% | 790.5 MiB/s | 11.9 MiB | 00m00s [ 43/150] Installing file-0:5.46-1.fc42 100% | 5.0 MiB/s | 101.7 KiB | 00m00s [ 44/150] Installing crypto-policies-0: 100% | 31.9 MiB/s | 163.5 KiB | 00m00s [ 45/150] Installing pcre2-0:10.45-1.fc 100% | 341.4 MiB/s | 699.1 KiB | 00m00s [ 46/150] Installing grep-0:3.11-10.fc4 100% | 59.0 MiB/s | 1.0 MiB | 00m00s [ 47/150] Installing xz-1:5.6.3-3.fc42. 100% | 76.8 MiB/s | 1.2 MiB | 00m00s [ 48/150] Installing libeconf-0:0.7.6-1 100% | 64.7 MiB/s | 66.2 KiB | 00m00s [ 49/150] Installing libcap-ng-0:0.8.5- 100% | 73.1 MiB/s | 74.8 KiB | 00m00s [ 50/150] Installing audit-libs-0:4.0.3 100% | 345.1 MiB/s | 353.4 KiB | 00m00s [ 51/150] Installing pam-libs-0:1.7.0-4 100% | 126.1 MiB/s | 129.1 KiB | 00m00s [ 52/150] Installing libcap-0:2.73-2.fc 100% | 15.9 MiB/s | 212.1 KiB | 00m00s [ 53/150] Installing systemd-libs-0:257 100% | 371.3 MiB/s | 2.2 MiB | 00m00s [ 54/150] Installing libsmartcols-0:2.4 100% | 177.3 MiB/s | 181.5 KiB | 00m00s [ 55/150] Installing libsepol-0:3.8-1.f 100% | 403.8 MiB/s | 827.0 KiB | 00m00s [ 56/150] Installing libselinux-0:3.8-1 100% | 189.8 MiB/s | 194.3 KiB | 00m00s [ 57/150] Installing sed-0:4.9-4.fc42.x 100% | 56.3 MiB/s | 865.5 KiB | 00m00s [ 58/150] Installing findutils-1:4.10.0 100% | 110.2 MiB/s | 1.9 MiB | 00m00s [ 59/150] Installing libmount-0:2.40.4- 100% | 348.9 MiB/s | 357.3 KiB | 00m00s [ 60/150] Installing lz4-libs-0:1.10.0- 100% | 154.7 MiB/s | 158.5 KiB | 00m00s [ 61/150] Installing lua-libs-0:5.4.7-3 100% | 275.4 MiB/s | 282.0 KiB | 00m00s [ 62/150] Installing alternatives-0:1.3 100% | 5.2 MiB/s | 63.8 KiB | 00m00s [ 63/150] Installing libffi-0:3.4.6-5.f 100% | 81.7 MiB/s | 83.7 KiB | 00m00s [ 64/150] Installing libtasn1-0:4.20.0- 100% | 173.9 MiB/s | 178.1 KiB | 00m00s [ 65/150] Installing p11-kit-0:0.25.5-5 100% | 115.0 MiB/s | 2.2 MiB | 00m00s [ 66/150] Installing libunistring-0:1.1 100% | 431.7 MiB/s | 1.7 MiB | 00m00s [ 67/150] Installing libidn2-0:2.3.8-1. 100% | 183.2 MiB/s | 562.7 KiB | 00m00s [ 68/150] Installing libpsl-0:0.21.5-5. 100% | 75.7 MiB/s | 77.5 KiB | 00m00s [ 69/150] Installing p11-kit-trust-0:0. 100% | 18.5 MiB/s | 397.2 KiB | 00m00s [ 70/150] Installing zstd-0:1.5.7-1.fc4 100% | 106.9 MiB/s | 1.7 MiB | 00m00s [ 71/150] Installing util-linux-core-0: 100% | 83.9 MiB/s | 1.4 MiB | 00m00s [ 72/150] Installing tar-2:1.35-5.fc42. 100% | 155.9 MiB/s | 3.0 MiB | 00m00s [ 73/150] Installing libsemanage-0:3.8- 100% | 151.5 MiB/s | 310.2 KiB | 00m00s [ 74/150] Installing shadow-utils-2:4.1 100% | 144.4 MiB/s | 4.0 MiB | 00m00s [ 75/150] Installing systemd-standalone 100% | 22.6 MiB/s | 277.9 KiB | 00m00s [ 76/150] Installing zip-0:3.0-43.fc42. 100% | 49.0 MiB/s | 702.4 KiB | 00m00s [ 77/150] Installing libfdisk-0:2.40.4- 100% | 364.7 MiB/s | 373.4 KiB | 00m00s [ 78/150] Installing libxml2-0:2.12.10- 100% | 106.0 MiB/s | 1.7 MiB | 00m00s [ 79/150] Installing bzip2-0:1.0.8-20.f 100% | 8.5 MiB/s | 103.8 KiB | 00m00s [ 80/150] Installing sqlite-libs-0:3.47 100% | 376.1 MiB/s | 1.5 MiB | 00m00s [ 81/150] Installing add-determinism-0: 100% | 145.1 MiB/s | 2.5 MiB | 00m00s [ 82/150] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 83/150] Installing filesystem-srpm-ma 100% | 0.0 B/s | 38.9 KiB | 00m00s [ 84/150] Installing ed-0:1.21-2.fc42.x 100% | 12.1 MiB/s | 148.8 KiB | 00m00s [ 85/150] Installing patch-0:2.8-1.fc42 100% | 18.3 MiB/s | 224.3 KiB | 00m00s [ 86/150] Installing elfutils-default-y 100% | 291.9 KiB/s | 2.0 KiB | 00m00s [ 87/150] Installing elfutils-libs-0:0. 100% | 217.7 MiB/s | 668.7 KiB | 00m00s [ 88/150] Installing cpio-0:2.15-4.fc42 100% | 68.7 MiB/s | 1.1 MiB | 00m00s [ 89/150] Installing diffutils-0:3.12-1 100% | 91.8 MiB/s | 1.6 MiB | 00m00s [ 90/150] Installing libgomp-0:15.0.1-0 100% | 526.3 MiB/s | 539.0 KiB | 00m00s [ 91/150] Installing json-c-0:0.18-2.fc 100% | 85.9 MiB/s | 88.0 KiB | 00m00s [ 92/150] Installing jansson-0:2.14-2.f 100% | 92.2 MiB/s | 94.4 KiB | 00m00s [ 93/150] Installing libpkgconf-0:2.3.0 100% | 0.0 B/s | 79.2 KiB | 00m00s [ 94/150] Installing pkgconf-0:2.3.0-2. 100% | 7.4 MiB/s | 91.0 KiB | 00m00s [ 95/150] Installing pkgconf-pkg-config 100% | 147.8 KiB/s | 1.8 KiB | 00m00s [ 96/150] Installing xxhash-libs-0:0.8. 100% | 89.4 MiB/s | 91.6 KiB | 00m00s [ 97/150] Installing libbrotli-0:1.1.0- 100% | 274.6 MiB/s | 843.6 KiB | 00m00s [ 98/150] Installing libnghttp2-0:1.64. 100% | 167.5 MiB/s | 171.5 KiB | 00m00s [ 99/150] Installing keyutils-libs-0:1. 100% | 58.3 MiB/s | 59.7 KiB | 00m00s [100/150] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 68.2 KiB | 00m00s [101/150] Installing libverto-0:0.3.2-1 100% | 26.6 MiB/s | 27.2 KiB | 00m00s [102/150] Installing libtool-ltdl-0:2.5 100% | 0.0 B/s | 71.2 KiB | 00m00s [103/150] Installing gdbm-libs-1:1.23-9 100% | 128.5 MiB/s | 131.6 KiB | 00m00s [104/150] Installing cyrus-sasl-lib-0:2 100% | 135.5 MiB/s | 2.3 MiB | 00m00s [105/150] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [106/150] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [107/150] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [108/150] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [109/150] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [110/150] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [111/150] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [112/150] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [113/150] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [114/150] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [115/150] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [116/150] Installing coreutils-common-0 100% | 413.1 MiB/s | 11.2 MiB | 00m00s [117/150] Installing openssl-libs-1:3.2 100% | 432.5 MiB/s | 7.8 MiB | 00m00s [118/150] Installing coreutils-0:9.6-2. 100% | 163.2 MiB/s | 5.5 MiB | 00m00s [119/150] Installing ca-certificates-0: 100% | 2.0 MiB/s | 2.4 MiB | 00m01s [120/150] Installing libarchive-0:3.7.7 100% | 227.7 MiB/s | 932.6 KiB | 00m00s [121/150] Installing krb5-libs-0:1.21.3 100% | 287.5 MiB/s | 2.3 MiB | 00m00s [122/150] Installing libssh-0:0.11.1-4. 100% | 277.1 MiB/s | 567.5 KiB | 00m00s [123/150] Installing gzip-0:1.13-3.fc42 100% | 27.8 MiB/s | 398.4 KiB | 00m00s [124/150] Installing rpm-sequoia-0:1.7. 100% | 402.4 MiB/s | 2.4 MiB | 00m00s [125/150] Installing rpm-libs-0:4.20.1- 100% | 353.2 MiB/s | 723.4 KiB | 00m00s [126/150] Installing rpm-build-libs-0:4 100% | 202.5 MiB/s | 207.4 KiB | 00m00s [127/150] Installing libevent-0:2.1.12- 100% | 295.2 MiB/s | 906.9 KiB | 00m00s [128/150] Installing openldap-0:2.6.9-3 100% | 214.5 MiB/s | 658.9 KiB | 00m00s [129/150] Installing libcurl-0:8.11.1-4 100% | 274.5 MiB/s | 843.2 KiB | 00m00s [130/150] Installing elfutils-debuginfo 100% | 6.2 MiB/s | 82.2 KiB | 00m00s [131/150] Installing elfutils-0:0.192-9 100% | 138.1 MiB/s | 2.6 MiB | 00m00s [132/150] Installing binutils-0:2.44-3. 100% | 323.8 MiB/s | 25.9 MiB | 00m00s [133/150] Installing gdb-minimal-0:16.2 100% | 307.1 MiB/s | 13.2 MiB | 00m00s [134/150] Installing debugedit-0:5.1-5. 100% | 14.7 MiB/s | 195.4 KiB | 00m00s [135/150] Installing curl-0:8.11.1-4.fc 100% | 20.1 MiB/s | 453.1 KiB | 00m00s [136/150] Installing rpm-0:4.20.1-1.fc4 100% | 96.1 MiB/s | 2.5 MiB | 00m00s [137/150] Installing efi-srpm-macros-0: 100% | 0.0 B/s | 41.1 KiB | 00m00s [138/150] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [139/150] Installing tree-sitter-srpm-m 100% | 0.0 B/s | 7.4 KiB | 00m00s [140/150] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [141/150] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s [142/150] Installing forge-srpm-macros- 100% | 0.0 B/s | 40.3 KiB | 00m00s [143/150] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [144/150] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [145/150] Installing redhat-rpm-config- 100% | 93.9 MiB/s | 192.2 KiB | 00m00s [146/150] Installing rpm-build-0:4.20.1 100% | 12.4 MiB/s | 177.4 KiB | 00m00s [147/150] Installing pyproject-srpm-mac 100% | 0.0 B/s | 2.5 KiB | 00m00s [148/150] Installing which-0:2.23-1.fc4 100% | 6.4 MiB/s | 85.6 KiB | 00m00s [149/150] Installing util-linux-0:2.40. 100% | 98.9 MiB/s | 3.5 MiB | 00m00s [150/150] Installing info-0:7.2-3.fc42. 100% | 223.2 KiB/s | 358.3 KiB | 00m02s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.6.0-1.fc42.x86_64 alternatives-1.32-1.fc42.x86_64 ansible-srpm-macros-1-17.1.fc42.noarch audit-libs-4.0.3-2.fc42.x86_64 basesystem-11-22.fc42.noarch bash-5.2.37-1.fc42.x86_64 binutils-2.44-3.fc42.x86_64 build-reproducibility-srpm-macros-0.6.0-1.fc42.noarch bzip2-1.0.8-20.fc42.x86_64 bzip2-libs-1.0.8-20.fc42.x86_64 ca-certificates-2024.2.69_v8.0.401-6.fc42.noarch coreutils-9.6-2.fc42.x86_64 coreutils-common-9.6-2.fc42.x86_64 cpio-2.15-4.fc42.x86_64 crypto-policies-20250214-1.gitff7551b.fc42.noarch curl-8.11.1-4.fc42.x86_64 cyrus-sasl-lib-2.1.28-30.fc42.x86_64 debugedit-5.1-5.fc42.x86_64 diffutils-3.12-1.fc42.x86_64 dwz-0.15-9.fc42.x86_64 ed-1.21-2.fc42.x86_64 efi-srpm-macros-6-2.fc42.noarch elfutils-0.192-9.fc42.x86_64 elfutils-debuginfod-client-0.192-9.fc42.x86_64 elfutils-default-yama-scope-0.192-9.fc42.noarch elfutils-libelf-0.192-9.fc42.x86_64 elfutils-libs-0.192-9.fc42.x86_64 fedora-gpg-keys-42-1.noarch fedora-release-42-26.noarch fedora-release-common-42-26.noarch fedora-release-identity-basic-42-26.noarch fedora-repos-42-1.noarch file-5.46-1.fc42.x86_64 file-libs-5.46-1.fc42.x86_64 filesystem-3.18-36.fc42.x86_64 filesystem-srpm-macros-3.18-36.fc42.noarch findutils-4.10.0-5.fc42.x86_64 fonts-srpm-macros-2.0.5-21.fc42.noarch forge-srpm-macros-0.4.0-2.fc42.noarch fpc-srpm-macros-1.3-14.fc42.noarch gawk-5.3.1-1.fc42.x86_64 gdb-minimal-16.2-3.fc42.x86_64 gdbm-libs-1.23-9.fc42.x86_64 ghc-srpm-macros-1.9.2-2.fc42.noarch glibc-2.41-3.fc42.x86_64 glibc-common-2.41-3.fc42.x86_64 glibc-gconv-extra-2.41-3.fc42.x86_64 glibc-minimal-langpack-2.41-3.fc42.x86_64 gmp-6.3.0-4.fc42.x86_64 gnat-srpm-macros-6-7.fc42.noarch go-srpm-macros-3.6.0-6.fc42.noarch gpg-pubkey-105ef944-65ca83d1 grep-3.11-10.fc42.x86_64 gzip-1.13-3.fc42.x86_64 info-7.2-3.fc42.x86_64 jansson-2.14-2.fc42.x86_64 json-c-0.18-2.fc42.x86_64 kernel-srpm-macros-1.0-25.fc42.noarch keyutils-libs-1.6.3-5.fc42.x86_64 krb5-libs-1.21.3-5.fc42.x86_64 libacl-2.3.2-3.fc42.x86_64 libarchive-3.7.7-4.fc42.x86_64 libattr-2.5.2-5.fc42.x86_64 libblkid-2.40.4-7.fc42.x86_64 libbrotli-1.1.0-6.fc42.x86_64 libcap-2.73-2.fc42.x86_64 libcap-ng-0.8.5-4.fc42.x86_64 libcom_err-1.47.2-3.fc42.x86_64 libcurl-8.11.1-4.fc42.x86_64 libeconf-0.7.6-1.fc42.x86_64 libevent-2.1.12-15.fc42.x86_64 libfdisk-2.40.4-7.fc42.x86_64 libffi-3.4.6-5.fc42.x86_64 libgcc-15.0.1-0.11.fc42.x86_64 libgomp-15.0.1-0.11.fc42.x86_64 libidn2-2.3.8-1.fc42.x86_64 libmount-2.40.4-7.fc42.x86_64 libnghttp2-1.64.0-3.fc42.x86_64 libpkgconf-2.3.0-2.fc42.x86_64 libpsl-0.21.5-5.fc42.x86_64 libselinux-3.8-1.fc42.x86_64 libsemanage-3.8-1.fc42.x86_64 libsepol-3.8-1.fc42.x86_64 libsmartcols-2.40.4-7.fc42.x86_64 libssh-0.11.1-4.fc42.x86_64 libssh-config-0.11.1-4.fc42.noarch libstdc++-15.0.1-0.11.fc42.x86_64 libtasn1-4.20.0-1.fc42.x86_64 libtool-ltdl-2.5.4-4.fc42.x86_64 libunistring-1.1-9.fc42.x86_64 libuuid-2.40.4-7.fc42.x86_64 libverto-0.3.2-10.fc42.x86_64 libxcrypt-4.4.38-7.fc42.x86_64 libxml2-2.12.10-1.fc42.x86_64 libzstd-1.5.7-1.fc42.x86_64 lua-libs-5.4.7-3.fc42.x86_64 lua-srpm-macros-1-15.fc42.noarch lz4-libs-1.10.0-2.fc42.x86_64 mpfr-4.2.2-1.fc42.x86_64 ncurses-base-6.5-5.20250125.fc42.noarch ncurses-libs-6.5-5.20250125.fc42.x86_64 ocaml-srpm-macros-10-4.fc42.noarch openblas-srpm-macros-2-19.fc42.noarch openldap-2.6.9-3.fc42.x86_64 openssl-libs-3.2.4-3.fc42.x86_64 p11-kit-0.25.5-5.fc42.x86_64 p11-kit-trust-0.25.5-5.fc42.x86_64 package-notes-srpm-macros-0.5-13.fc42.noarch pam-libs-1.7.0-4.fc42.x86_64 patch-2.8-1.fc42.x86_64 pcre2-10.45-1.fc42.x86_64 pcre2-syntax-10.45-1.fc42.noarch perl-srpm-macros-1-57.fc42.noarch pkgconf-2.3.0-2.fc42.x86_64 pkgconf-m4-2.3.0-2.fc42.noarch pkgconf-pkg-config-2.3.0-2.fc42.x86_64 popt-1.19-8.fc42.x86_64 publicsuffix-list-dafsa-20250116-1.fc42.noarch pyproject-srpm-macros-1.18.1-1.fc42.noarch python-srpm-macros-3.13-4.fc42.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.9.0-2.fc42.noarch readline-8.2-13.fc42.x86_64 redhat-rpm-config-342-4.fc42.noarch rpm-4.20.1-1.fc42.x86_64 rpm-build-4.20.1-1.fc42.x86_64 rpm-build-libs-4.20.1-1.fc42.x86_64 rpm-libs-4.20.1-1.fc42.x86_64 rpm-sequoia-1.7.0-5.fc42.x86_64 rust-srpm-macros-26.3-4.fc42.noarch sed-4.9-4.fc42.x86_64 setup-2.15.0-13.fc42.noarch shadow-utils-4.17.4-1.fc42.x86_64 sqlite-libs-3.47.2-2.fc42.x86_64 systemd-libs-257.5-2.fc42.x86_64 systemd-standalone-sysusers-257.5-2.fc42.x86_64 tar-1.35-5.fc42.x86_64 tree-sitter-srpm-macros-0.1.0-8.fc42.noarch unzip-6.0-66.fc42.x86_64 util-linux-2.40.4-7.fc42.x86_64 util-linux-core-2.40.4-7.fc42.x86_64 which-2.23-1.fc42.x86_64 xxhash-libs-0.8.3-2.fc42.x86_64 xz-5.6.3-3.fc42.x86_64 xz-libs-5.6.3-3.fc42.x86_64 zig-srpm-macros-1-4.fc42.noarch zip-3.0-43.fc42.x86_64 zlib-ng-compat-2.2.4-3.fc42.x86_64 zstd-1.5.7-1.fc42.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Wrote: /builddir/build/SRPMS/R-CRAN-TDA-1.9.4-1.fc42.copr8933184.src.rpm RPM build warnings: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-42-x86_64-1745150703.065754/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-my2107w9/R-CRAN-TDA/R-CRAN-TDA.spec) Config(child) 0 minutes 10 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-TDA-1.9.4-1.fc42.copr8933184.src.rpm) Config(fedora-42-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-42-x86_64-1745150703.065754/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.20.1-1.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 python3-dnf-4.23.0-1.fc41.noarch python3-dnf-plugins-core-4.10.1-1.fc41.noarch dnf5-5.2.12.0-2.fc41.x86_64 dnf5-plugins-5.2.12.0-2.fc41.x86_64 Finish: chroot init Start: build phase for R-CRAN-TDA-1.9.4-1.fc42.copr8933184.src.rpm Start: build setup for R-CRAN-TDA-1.9.4-1.fc42.copr8933184.src.rpm Building target platforms: x86_64 Building for target x86_64 warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Wrote: /builddir/build/SRPMS/R-CRAN-TDA-1.9.4-1.fc42.copr8933184.src.rpm RPM build warnings: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Updating and loading repositories: updates 100% | 295.3 KiB/s | 30.1 KiB | 00m00s fedora 100% | 95.3 KiB/s | 28.0 KiB | 00m00s Copr repository 100% | 66.9 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: R-CRAN-BH noarch 1.87.0.1-1.fc42.copr8922436 copr_base 122.2 MiB R-CRAN-FNN x86_64 1.1.4.1-1.fc42.copr8922504 copr_base 236.1 KiB R-CRAN-Rcpp x86_64 1.0.14-1.fc42.copr8922423 copr_base 8.4 MiB R-CRAN-RcppEigen x86_64 0.3.4.0.2-1.fc42.copr8926104 copr_base 9.0 MiB R-CRAN-igraph x86_64 2.1.4-1.fc42.copr8930309 copr_base 10.2 MiB R-CRAN-scales noarch 1.3.0-1.fc42.copr8928415 copr_base 1.1 MiB R-core x86_64 4.5.0-3.fc42~bootstrap copr_base 103.7 MiB R-devel x86_64 4.5.0-3.fc42~bootstrap copr_base 0.0 B gmp-devel x86_64 1:6.3.0-4.fc42 fedora 352.3 KiB Installing dependencies: R-CRAN-Matrix x86_64 1.7.3-1.fc42.copr8927562 copr_base 8.2 MiB R-CRAN-R6 noarch 2.6.1-1.fc42.copr8922444 copr_base 123.4 KiB R-CRAN-RColorBrewer noarch 1.1.3-1.fc42.copr8922454 copr_base 63.7 KiB R-CRAN-cli x86_64 3.6.4-1.fc42.copr8922468 copr_base 2.4 MiB R-CRAN-colorspace x86_64 2.1.1-1.fc42.copr8922459 copr_base 4.1 MiB R-CRAN-farver x86_64 2.1.2-1.fc42.copr8922502 copr_base 2.1 MiB R-CRAN-glue x86_64 1.8.0-1.fc42.copr8922424 copr_base 345.2 KiB R-CRAN-labeling noarch 0.4.3-1.fc42.copr8922453 copr_base 94.1 KiB R-CRAN-lattice x86_64 0.22.7-1.fc42.copr8924871 copr_base 2.0 MiB R-CRAN-lifecycle noarch 1.0.4-1.fc42.copr8926745 copr_base 284.1 KiB R-CRAN-magrittr x86_64 2.0.3-1.fc42.copr8922441 copr_base 414.8 KiB R-CRAN-munsell noarch 0.5.1-1.fc42.copr8926108 copr_base 379.0 KiB R-CRAN-pkgconfig noarch 2.0.3-3.fc42.copr8922443 copr_base 34.3 KiB R-CRAN-rlang x86_64 1.1.6-1.fc42.copr8922429 copr_base 2.6 MiB R-CRAN-vctrs x86_64 0.6.5-1.fc42.copr8928418 copr_base 2.4 MiB R-CRAN-viridisLite noarch 0.4.2-1.fc42.copr8922433 copr_base 1.3 MiB R-core-devel x86_64 4.5.0-3.fc42~bootstrap copr_base 411.0 KiB R-java x86_64 4.5.0-3.fc42~bootstrap copr_base 0.0 B R-java-devel x86_64 4.5.0-3.fc42~bootstrap copr_base 0.0 B R-littler x86_64 0.3.19-6.fc42 fedora 160.7 KiB R-rpm-macros noarch 1.2.1-12.fc42 fedora 5.6 KiB abattis-cantarell-vf-fonts noarch 0.301-14.fc42 fedora 192.7 KiB alsa-lib x86_64 1.2.14-2.fc42 updates 1.4 MiB annobin-docs noarch 12.88-1.fc42 fedora 98.6 KiB annobin-plugin-gcc x86_64 12.88-1.fc42 fedora 991.7 KiB avahi-libs x86_64 0.9~rc2-2.fc42 fedora 183.6 KiB bzip2-devel x86_64 1.0.8-20.fc42 fedora 309.8 KiB cairo x86_64 1.18.2-3.fc42 fedora 1.8 MiB cmake-filesystem x86_64 3.31.6-2.fc42 fedora 0.0 B cpp x86_64 15.0.1-0.11.fc42 fedora 37.8 MiB cups-filesystem noarch 1:2.4.12-2.fc42 updates 0.0 B cups-libs x86_64 1:2.4.12-2.fc42 updates 618.7 KiB dbus-libs x86_64 1:1.16.0-3.fc42 fedora 349.5 KiB default-fonts-core-sans noarch 4.2-4.fc42 fedora 11.9 KiB desktop-file-utils x86_64 0.28-1.fc42 fedora 218.4 KiB emacs-filesystem noarch 1:30.0-4.fc42 fedora 0.0 B flexiblas x86_64 3.4.5-1.fc42 fedora 50.4 KiB flexiblas-devel x86_64 3.4.5-1.fc42 fedora 4.9 MiB flexiblas-netlib x86_64 3.4.5-1.fc42 fedora 10.9 MiB flexiblas-netlib64 x86_64 3.4.5-1.fc42 fedora 11.0 MiB flexiblas-openblas-openmp x86_64 3.4.5-1.fc42 fedora 39.2 KiB flexiblas-openblas-openmp64 x86_64 3.4.5-1.fc42 fedora 39.2 KiB fontconfig x86_64 2.16.0-2.fc42 fedora 764.7 KiB fonts-filesystem noarch 1:2.0.5-21.fc42 fedora 0.0 B freetype x86_64 2.13.3-2.fc42 fedora 858.2 KiB fribidi x86_64 1.0.16-2.fc42 fedora 194.3 KiB gcc x86_64 15.0.1-0.11.fc42 fedora 110.9 MiB gcc-c++ x86_64 15.0.1-0.11.fc42 fedora 41.3 MiB gcc-gfortran x86_64 15.0.1-0.11.fc42 fedora 40.3 MiB gcc-plugin-annobin x86_64 15.0.1-0.11.fc42 fedora 57.2 KiB glib2 x86_64 2.84.1-1.fc42 updates 14.7 MiB glibc-devel x86_64 2.41-3.fc42 updates 2.3 MiB glpk x86_64 5.0-13.fc42 fedora 914.6 KiB gmp-c++ x86_64 1:6.3.0-4.fc42 fedora 27.6 KiB gnutls x86_64 3.8.9-3.fc42 fedora 3.6 MiB google-noto-fonts-common noarch 20250301-1.fc42 fedora 17.7 KiB google-noto-sans-vf-fonts noarch 20250301-1.fc42 fedora 1.4 MiB graphite2 x86_64 1.3.14-18.fc42 fedora 195.8 KiB harfbuzz x86_64 10.4.0-1.fc42 fedora 2.7 MiB java-21-openjdk x86_64 1:21.0.6.0.7-6.fc42 fedora 1.0 MiB java-21-openjdk-devel x86_64 1:21.0.6.0.7-6.fc42 fedora 11.2 MiB java-21-openjdk-headless x86_64 1:21.0.6.0.7-6.fc42 fedora 201.8 MiB javapackages-filesystem noarch 6.4.0-5.fc42 fedora 2.0 KiB jbigkit-libs x86_64 2.1-31.fc42 fedora 121.4 KiB kernel-headers x86_64 6.14.0-63.fc42 fedora 6.5 MiB less x86_64 668-2.fc42 fedora 405.8 KiB libICE x86_64 1.1.2-2.fc42 fedora 198.4 KiB libRmath x86_64 4.5.0-3.fc42~bootstrap copr_base 242.7 KiB libRmath-devel x86_64 4.5.0-3.fc42~bootstrap copr_base 19.9 KiB libSM x86_64 1.2.5-2.fc42 fedora 105.0 KiB libX11 x86_64 1.8.11-1.fc42 fedora 1.3 MiB libX11-common noarch 1.8.11-1.fc42 fedora 1.2 MiB libX11-devel x86_64 1.8.11-1.fc42 fedora 1.0 MiB libX11-xcb x86_64 1.8.11-1.fc42 fedora 10.9 KiB libXau x86_64 1.0.12-2.fc42 fedora 76.9 KiB libXau-devel x86_64 1.0.12-2.fc42 fedora 7.5 KiB libXcomposite x86_64 0.4.6-5.fc42 fedora 44.4 KiB libXext x86_64 1.3.6-3.fc42 fedora 90.0 KiB libXft x86_64 2.3.8-8.fc42 fedora 168.4 KiB libXi x86_64 1.8.2-2.fc42 fedora 84.6 KiB libXmu x86_64 1.2.1-3.fc42 fedora 199.3 KiB libXrender x86_64 0.9.12-2.fc42 fedora 50.0 KiB libXt x86_64 1.3.1-2.fc42 fedora 429.7 KiB libXtst x86_64 1.2.5-2.fc42 fedora 33.5 KiB libdatrie x86_64 0.2.13-11.fc42 fedora 57.8 KiB libdeflate x86_64 1.23-2.fc42 fedora 122.7 KiB libdeflate-devel x86_64 1.23-2.fc42 fedora 25.9 KiB libfontenc x86_64 1.1.8-3.fc42 fedora 70.9 KiB libgfortran x86_64 15.0.1-0.11.fc42 fedora 3.3 MiB libicu x86_64 76.1-4.fc42 fedora 36.3 MiB libicu-devel x86_64 76.1-4.fc42 fedora 5.0 MiB libjpeg-turbo x86_64 3.1.0-2.fc42 fedora 803.2 KiB liblerc x86_64 4.0.0-8.fc42 fedora 636.1 KiB libmpc x86_64 1.3.1-7.fc42 fedora 164.5 KiB libpng x86_64 2:1.6.44-2.fc42 fedora 241.7 KiB libquadmath x86_64 15.0.1-0.11.fc42 fedora 317.9 KiB libquadmath-devel x86_64 15.0.1-0.11.fc42 fedora 21.9 KiB libstdc++-devel x86_64 15.0.1-0.11.fc42 fedora 16.0 MiB libthai x86_64 0.1.29-10.fc42 fedora 783.4 KiB libtiff x86_64 4.7.0-3.fc42 fedora 619.1 KiB libtirpc x86_64 1.3.6-1.rc3.fc42.2 fedora 199.0 KiB libtirpc-devel x86_64 1.3.6-1.rc3.fc42.2 fedora 251.6 KiB libwebp x86_64 1.5.0-2.fc42 fedora 947.6 KiB libxcb x86_64 1.17.0-5.fc42 fedora 1.1 MiB libxcb-devel x86_64 1.17.0-5.fc42 fedora 2.7 MiB libxcrypt-devel x86_64 4.4.38-7.fc42 updates 30.8 KiB libzstd-devel x86_64 1.5.7-1.fc42 fedora 208.0 KiB lksctp-tools x86_64 1.0.20-2.fc42 fedora 250.3 KiB make x86_64 1:4.4.1-10.fc42 fedora 1.8 MiB mkfontscale x86_64 1.2.3-2.fc42 fedora 45.0 KiB nettle x86_64 3.10.1-1.fc42 fedora 790.5 KiB nspr x86_64 4.36.0-5.fc42 fedora 315.5 KiB nss x86_64 3.109.0-1.fc42 fedora 1.9 MiB nss-softokn x86_64 3.109.0-1.fc42 fedora 1.9 MiB nss-softokn-freebl x86_64 3.109.0-1.fc42 fedora 852.4 KiB nss-sysinit x86_64 3.109.0-1.fc42 fedora 18.1 KiB nss-util x86_64 3.109.0-1.fc42 fedora 204.8 KiB openblas x86_64 0.3.29-1.fc42 fedora 111.7 KiB openblas-openmp x86_64 0.3.29-1.fc42 fedora 43.7 MiB openblas-openmp64 x86_64 0.3.29-1.fc42 fedora 43.9 MiB pango x86_64 1.56.3-1.fc42 fedora 1.0 MiB pcre2-devel x86_64 10.45-1.fc42 fedora 2.1 MiB pcre2-utf16 x86_64 10.45-1.fc42 fedora 626.3 KiB pcre2-utf32 x86_64 10.45-1.fc42 fedora 598.2 KiB pixman x86_64 0.44.2-2.fc42 fedora 674.2 KiB suitesparse x86_64 7.8.3-1.fc42 fedora 114.7 MiB tcl8 x86_64 1:8.6.15-10.fc42 fedora 4.3 MiB tk8 x86_64 1:8.6.15-5.fc42 fedora 3.2 MiB tre x86_64 0.8.0-47.20140228gitc2f5d13.fc42 fedora 75.8 KiB tre-common noarch 0.8.0-47.20140228gitc2f5d13.fc42 fedora 81.0 KiB tre-devel x86_64 0.8.0-47.20140228gitc2f5d13.fc42 fedora 10.7 KiB ttmkfdir x86_64 3.0.9-72.fc42 fedora 118.5 KiB tzdata noarch 2025b-1.fc42 fedora 1.6 MiB tzdata-java noarch 2025b-1.fc42 fedora 100.1 KiB xdg-utils noarch 1.2.1-3.fc42 fedora 346.3 KiB xml-common noarch 0.6.3-66.fc42 fedora 78.4 KiB xorg-x11-fonts-Type1 noarch 7.5-40.fc42 fedora 863.3 KiB xorg-x11-proto-devel noarch 2024.1-4.fc42 fedora 1.7 MiB xz-devel x86_64 1:5.6.3-3.fc42 fedora 255.6 KiB zlib-ng x86_64 2.2.4-3.fc42 fedora 157.0 KiB zlib-ng-compat-devel x86_64 2.2.4-3.fc42 fedora 107.0 KiB Transaction Summary: Installing: 150 packages Total size of inbound packages is 313 MiB. Need to download 40 MiB. After this operation, 1 GiB extra will be used (install 1 GiB, remove 0 B). [ 1/150] R-CRAN-Rcpp-0:1.0.14-1.fc42.c 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 2/150] R-CRAN-RcppEigen-0:0.3.4.0.2- 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 3/150] R-devel-0:4.5.0-3.fc42~bootst 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 4/150] R-core-0:4.5.0-3.fc42~bootstr 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 5/150] R-littler-0:0.3.19-6.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 6/150] flexiblas-netlib-0:3.4.5-1.fc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 7/150] R-CRAN-R6-0:2.6.1-1.fc42.copr 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 8/150] R-CRAN-cli-0:3.6.4-1.fc42.cop 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 9/150] R-CRAN-glue-0:1.8.0-1.fc42.co 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 10/150] R-CRAN-lifecycle-0:1.0.4-1.fc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 11/150] R-CRAN-Matrix-0:1.7.3-1.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 12/150] R-rpm-macros-0:1.2.1-12.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 13/150] R-core-devel-0:4.5.0-3.fc42~b 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 14/150] R-java-devel-0:4.5.0-3.fc42~b 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 15/150] cairo-0:1.18.2-3.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 16/150] less-0:668-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 17/150] libX11-0:1.8.11-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 18/150] libXmu-0:1.2.1-3.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 19/150] libXt-0:1.3.1-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 20/150] libdeflate-0:1.23-2.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 21/150] libicu-0:76.1-4.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 22/150] libjpeg-turbo-0:3.1.0-2.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 23/150] libpng-2:1.6.44-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 24/150] libtiff-0:4.7.0-3.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 25/150] libtirpc-0:1.3.6-1.rc3.fc42.2 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 26/150] pango-0:1.56.3-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 27/150] tcl8-1:8.6.15-10.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 28/150] tk8-1:8.6.15-5.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 29/150] tre-0:0.8.0-47.20140228gitc2f 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 30/150] tzdata-0:2025b-1.fc42.noarch 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 31/150] xdg-utils-0:1.2.1-3.fc42.noar 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 32/150] libRmath-0:4.5.0-3.fc42~boots 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 33/150] flexiblas-0:3.4.5-1.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 34/150] flexiblas-openblas-openmp-0:3 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 35/150] libgfortran-0:15.0.1-0.11.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 36/150] libquadmath-0:15.0.1-0.11.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 37/150] R-CRAN-lattice-0:0.22.7-1.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 38/150] make-1:4.4.1-10.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 39/150] libRmath-devel-0:4.5.0-3.fc42 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 40/150] java-21-openjdk-devel-1:21.0. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 41/150] R-java-0:4.5.0-3.fc42~bootstr 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 42/150] fontconfig-0:2.16.0-2.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 43/150] freetype-0:2.13.3-2.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 44/150] libXext-0:1.3.6-3.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 45/150] libXrender-0:0.9.12-2.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 46/150] libxcb-0:1.17.0-5.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 47/150] pixman-0:0.44.2-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 48/150] libX11-common-0:1.8.11-1.fc42 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 49/150] libICE-0:1.1.2-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 50/150] libSM-0:1.2.5-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 51/150] jbigkit-libs-0:2.1-31.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 52/150] liblerc-0:4.0.0-8.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 53/150] libwebp-0:1.5.0-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 54/150] fribidi-0:1.0.16-2.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 55/150] harfbuzz-0:10.4.0-1.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 56/150] libXft-0:2.3.8-8.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 57/150] libthai-0:0.1.29-10.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 58/150] tre-common-0:0.8.0-47.2014022 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 59/150] desktop-file-utils-0:0.28-1.f 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 60/150] openblas-openmp-0:0.3.29-1.fc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 61/150] java-21-openjdk-1:21.0.6.0.7- 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 62/150] java-21-openjdk-headless-1:21 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 63/150] default-fonts-core-sans-0:4.2 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 64/150] fonts-filesystem-1:2.0.5-21.f 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 65/150] xml-common-0:0.6.3-66.fc42.no 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 66/150] libXau-0:1.0.12-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 67/150] graphite2-0:1.3.14-18.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 68/150] libdatrie-0:0.2.13-11.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 69/150] emacs-filesystem-1:30.0-4.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 70/150] libXcomposite-0:0.4.6-5.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 71/150] libXi-0:1.8.2-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 72/150] libXtst-0:1.2.5-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 73/150] xorg-x11-fonts-Type1-0:7.5-40 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 74/150] javapackages-filesystem-0:6.4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 75/150] lksctp-tools-0:1.0.20-2.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 76/150] tzdata-java-0:2025b-1.fc42.no 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 77/150] abattis-cantarell-vf-fonts-0: 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 78/150] google-noto-sans-vf-fonts-0:2 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 79/150] mkfontscale-0:1.2.3-2.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 80/150] ttmkfdir-0:3.0.9-72.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 81/150] google-noto-fonts-common-0:20 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 82/150] libfontenc-0:1.1.8-3.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 83/150] bzip2-devel-0:1.0.8-20.fc42.x 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 84/150] flexiblas-devel-0:3.4.5-1.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 85/150] flexiblas-netlib64-0:3.4.5-1. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 86/150] flexiblas-openblas-openmp64-0 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 87/150] openblas-openmp64-0:0.3.29-1. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 88/150] gcc-c++-0:15.0.1-0.11.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 89/150] gcc-0:15.0.1-0.11.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 90/150] libmpc-0:1.3.1-7.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 91/150] cpp-0:15.0.1-0.11.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 92/150] gcc-gfortran-0:15.0.1-0.11.fc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 93/150] libX11-devel-0:1.8.11-1.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 94/150] libX11-xcb-0:1.8.11-1.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 95/150] xorg-x11-proto-devel-0:2024.1 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 96/150] libdeflate-devel-0:1.23-2.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 97/150] cmake-filesystem-0:3.31.6-2.f 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 98/150] libicu-devel-0:76.1-4.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 99/150] libtirpc-devel-0:1.3.6-1.rc3. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [100/150] libzstd-devel-0:1.5.7-1.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [101/150] pcre2-devel-0:10.45-1.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [102/150] pcre2-utf16-0:10.45-1.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [103/150] pcre2-utf32-0:10.45-1.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [104/150] tre-devel-0:0.8.0-47.20140228 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [105/150] xz-devel-1:5.6.3-3.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [106/150] zlib-ng-compat-devel-0:2.2.4- 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [107/150] glib2-0:2.84.1-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [108/150] gnutls-0:3.8.9-3.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [109/150] nettle-0:3.10.1-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [110/150] R-CRAN-rlang-0:1.1.6-1.fc42.c 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [111/150] openblas-0:0.3.29-1.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [112/150] libxcb-devel-0:1.17.0-5.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [113/150] alsa-lib-0:1.2.14-2.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [114/150] cups-libs-1:2.4.12-2.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [115/150] cups-filesystem-1:2.4.12-2.fc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [116/150] avahi-libs-0:0.9~rc2-2.fc42.x 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [117/150] dbus-libs-1:1.16.0-3.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [118/150] nss-0:3.109.0-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [119/150] nspr-0:4.36.0-5.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [120/150] nss-softokn-0:3.109.0-1.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [121/150] nss-sysinit-0:3.109.0-1.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [122/150] nss-util-0:3.109.0-1.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [123/150] nss-softokn-freebl-0:3.109.0- 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [124/150] libquadmath-devel-0:15.0.1-0. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [125/150] libstdc++-devel-0:15.0.1-0.11 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [126/150] glibc-devel-0:2.41-3.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [127/150] libxcrypt-devel-0:4.4.38-7.fc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [128/150] kernel-headers-0:6.14.0-63.fc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [129/150] libXau-devel-0:1.0.12-2.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [130/150] annobin-plugin-gcc-0:12.88-1. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [131/150] gcc-plugin-annobin-0:15.0.1-0 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [132/150] annobin-docs-0:12.88-1.fc42.n 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [133/150] R-CRAN-FNN-0:1.1.4.1-1.fc42.c 100% | 10.9 MiB/s | 145.4 KiB | 00m00s [134/150] R-CRAN-scales-0:1.3.0-1.fc42. 100% | 41.6 MiB/s | 723.9 KiB | 00m00s [135/150] gmp-devel-1:6.3.0-4.fc42.x86_ 100% | 14.2 MiB/s | 174.4 KiB | 00m00s [136/150] R-CRAN-RColorBrewer-0:1.1.3-1 100% | 7.8 MiB/s | 63.8 KiB | 00m00s [137/150] R-CRAN-farver-0:2.1.2-1.fc42. 100% | 190.0 MiB/s | 1.3 MiB | 00m00s [138/150] R-CRAN-labeling-0:0.4.3-1.fc4 100% | 18.8 MiB/s | 77.1 KiB | 00m00s [139/150] R-CRAN-igraph-0:2.1.4-1.fc42. 100% | 121.9 MiB/s | 5.2 MiB | 00m00s [140/150] R-CRAN-munsell-0:0.5.1-1.fc42 100% | 40.6 MiB/s | 249.5 KiB | 00m00s [141/150] glpk-0:5.0-13.fc42.x86_64 100% | 64.9 MiB/s | 398.7 KiB | 00m00s [142/150] R-CRAN-viridisLite-0:0.4.2-1. 100% | 124.9 MiB/s | 1.2 MiB | 00m00s [143/150] R-CRAN-magrittr-0:2.0.3-1.fc4 100% | 54.7 MiB/s | 223.9 KiB | 00m00s [144/150] R-CRAN-BH-0:1.87.0.1-1.fc42.c 100% | 129.3 MiB/s | 10.0 MiB | 00m00s [145/150] R-CRAN-pkgconfig-0:2.0.3-3.fc 100% | 3.0 MiB/s | 30.3 KiB | 00m00s [146/150] R-CRAN-vctrs-0:0.6.5-1.fc42.c 100% | 116.9 MiB/s | 1.3 MiB | 00m00s [147/150] gmp-c++-1:6.3.0-4.fc42.x86_64 100% | 6.0 MiB/s | 18.5 KiB | 00m00s [148/150] zlib-ng-0:2.2.4-3.fc42.x86_64 100% | 20.9 MiB/s | 85.7 KiB | 00m00s [149/150] R-CRAN-colorspace-0:2.1.1-1.f 100% | 154.4 MiB/s | 2.5 MiB | 00m00s [150/150] suitesparse-0:7.8.3-1.fc42.x8 100% | 249.7 MiB/s | 16.5 MiB | 00m00s -------------------------------------------------------------------------------- [150/150] Total 100% | 53.9 MiB/s | 40.2 MiB | 00m01s Running transaction [ 1/152] Verify package files 100% | 156.0 B/s | 150.0 B | 00m01s >>> Running pre-transaction scriptlet: java-21-openjdk-headless-1:21.0.6.0.7-6.f >>> Finished pre-transaction scriptlet: java-21-openjdk-headless-1:21.0.6.0.7-6. >>> [RPM] /var/lib/mock/fedora-42-x86_64-1745150703.065754/root/var/cache/dnf/co [ 2/152] Prepare transaction 100% | 852.0 B/s | 150.0 B | 00m00s [ 3/152] Installing nspr-0:4.36.0-5.fc 100% | 154.9 MiB/s | 317.3 KiB | 00m00s [ 4/152] Installing libgfortran-0:15.0 100% | 473.2 MiB/s | 3.3 MiB | 00m00s [ 5/152] Installing nss-util-0:3.109.0 100% | 201.0 MiB/s | 205.8 KiB | 00m00s [ 6/152] Installing libmpc-0:1.3.1-7.f 100% | 162.2 MiB/s | 166.1 KiB | 00m00s [ 7/152] Installing libquadmath-0:15.0 100% | 311.7 MiB/s | 319.2 KiB | 00m00s [ 8/152] Installing fonts-filesystem-1 100% | 0.0 B/s | 788.0 B | 00m00s [ 9/152] Installing libpng-2:1.6.44-2. 100% | 237.2 MiB/s | 242.9 KiB | 00m00s [ 10/152] Installing openblas-0:0.3.29- 100% | 110.8 MiB/s | 113.5 KiB | 00m00s [ 11/152] Installing cmake-filesystem-0 100% | 7.4 MiB/s | 7.6 KiB | 00m00s [ 12/152] Installing xorg-x11-proto-dev 100% | 254.7 MiB/s | 1.8 MiB | 00m00s [ 13/152] Installing libXau-0:1.0.12-2. 100% | 76.6 MiB/s | 78.5 KiB | 00m00s [ 14/152] Installing libxcb-0:1.17.0-5. 100% | 216.1 MiB/s | 1.1 MiB | 00m00s [ 15/152] Installing libICE-0:1.1.2-2.f 100% | 195.1 MiB/s | 199.8 KiB | 00m00s [ 16/152] Installing make-1:4.4.1-10.fc 100% | 105.9 MiB/s | 1.8 MiB | 00m00s [ 17/152] Installing libRmath-0:4.5.0-3 100% | 237.9 MiB/s | 243.6 KiB | 00m00s [ 18/152] Installing tcl8-1:8.6.15-10.f 100% | 171.5 MiB/s | 4.3 MiB | 00m00s [ 19/152] Installing libtirpc-0:1.3.6-1 100% | 196.0 MiB/s | 200.7 KiB | 00m00s [ 20/152] Installing libjpeg-turbo-0:3. 100% | 393.0 MiB/s | 804.9 KiB | 00m00s [ 21/152] Installing libicu-0:76.1-4.fc 100% | 422.5 MiB/s | 36.3 MiB | 00m00s [ 22/152] Installing libdeflate-0:1.23- 100% | 121.2 MiB/s | 124.1 KiB | 00m00s [ 23/152] Installing libdeflate-devel-0 100% | 26.6 MiB/s | 27.3 KiB | 00m00s [ 24/152] Installing libicu-devel-0:76. 100% | 203.0 MiB/s | 5.1 MiB | 00m00s [ 25/152] Installing libtirpc-devel-0:1 100% | 128.5 MiB/s | 263.1 KiB | 00m00s [ 26/152] Installing libRmath-devel-0:4 100% | 0.0 B/s | 20.3 KiB | 00m00s [ 27/152] Installing libSM-0:1.2.5-2.fc 100% | 103.9 MiB/s | 106.4 KiB | 00m00s [ 28/152] Installing libXau-devel-0:1.0 100% | 1.8 MiB/s | 9.4 KiB | 00m00s [ 29/152] Installing libxcb-devel-0:1.1 100% | 74.8 MiB/s | 3.1 MiB | 00m00s [ 30/152] Installing zlib-ng-compat-dev 100% | 106.0 MiB/s | 108.5 KiB | 00m00s [ 31/152] Installing openblas-openmp-0: 100% | 642.9 MiB/s | 43.7 MiB | 00m00s [ 32/152] Installing flexiblas-0:3.4.5- 100% | 0.0 B/s | 51.6 KiB | 00m00s [ 33/152] Installing flexiblas-openblas 100% | 39.1 MiB/s | 40.1 KiB | 00m00s [ 34/152] Installing flexiblas-netlib-0 100% | 295.5 MiB/s | 10.9 MiB | 00m00s [ 35/152] Installing suitesparse-0:7.8. 100% | 591.6 MiB/s | 114.8 MiB | 00m00s [ 36/152] Installing openblas-openmp64- 100% | 664.5 MiB/s | 43.9 MiB | 00m00s [ 37/152] Installing flexiblas-netlib64 100% | 297.8 MiB/s | 11.0 MiB | 00m00s [ 38/152] Installing flexiblas-openblas 100% | 39.1 MiB/s | 40.1 KiB | 00m00s [ 39/152] Installing flexiblas-devel-0: 100% | 258.2 MiB/s | 4.9 MiB | 00m00s [ 40/152] Installing abattis-cantarell- 100% | 189.9 MiB/s | 194.4 KiB | 00m00s [ 41/152] Installing cpp-0:15.0.1-0.11. 100% | 374.5 MiB/s | 37.8 MiB | 00m00s [ 42/152] Installing nss-softokn-freebl 100% | 278.2 MiB/s | 854.5 KiB | 00m00s [ 43/152] Installing nss-softokn-0:3.10 100% | 377.8 MiB/s | 1.9 MiB | 00m00s [ 44/152] Installing nss-sysinit-0:3.10 100% | 1.4 MiB/s | 19.2 KiB | 00m00s [ 45/152] Installing nss-0:3.109.0-1.fc 100% | 172.0 MiB/s | 1.9 MiB | 00m00s [ 46/152] Installing annobin-docs-0:12. 100% | 32.5 MiB/s | 99.8 KiB | 00m00s [ 47/152] Installing kernel-headers-0:6 100% | 215.3 MiB/s | 6.7 MiB | 00m00s [ 48/152] Installing libxcrypt-devel-0: 100% | 16.2 MiB/s | 33.1 KiB | 00m00s [ 49/152] Installing glibc-devel-0:2.41 100% | 166.6 MiB/s | 2.3 MiB | 00m00s [ 50/152] Installing gcc-0:15.0.1-0.11. 100% | 423.4 MiB/s | 110.9 MiB | 00m00s [ 51/152] Installing libquadmath-devel- 100% | 22.9 MiB/s | 23.4 KiB | 00m00s [ 52/152] Installing gcc-gfortran-0:15. 100% | 353.2 MiB/s | 40.3 MiB | 00m00s [ 53/152] Installing libstdc++-devel-0: 100% | 384.3 MiB/s | 16.1 MiB | 00m00s [ 54/152] Installing gcc-c++-0:15.0.1-0 100% | 371.8 MiB/s | 41.3 MiB | 00m00s [ 55/152] Installing dbus-libs-1:1.16.0 100% | 171.2 MiB/s | 350.6 KiB | 00m00s [ 56/152] Installing avahi-libs-0:0.9~r 100% | 181.8 MiB/s | 186.2 KiB | 00m00s [ 57/152] Installing cups-filesystem-1: 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [ 58/152] Installing alsa-lib-0:1.2.14- 100% | 85.0 MiB/s | 1.4 MiB | 00m00s [ 59/152] Installing nettle-0:3.10.1-1. 100% | 258.3 MiB/s | 793.6 KiB | 00m00s [ 60/152] Installing gnutls-0:3.8.9-3.f 100% | 357.4 MiB/s | 3.6 MiB | 00m00s [ 61/152] Installing glib2-0:2.84.1-1.f 100% | 312.9 MiB/s | 14.7 MiB | 00m00s [ 62/152] Installing cups-libs-1:2.4.12 100% | 302.9 MiB/s | 620.3 KiB | 00m00s [ 63/152] Installing xz-devel-1:5.6.3-3 100% | 253.3 MiB/s | 259.4 KiB | 00m00s [ 64/152] Installing pcre2-utf32-0:10.4 100% | 292.5 MiB/s | 599.1 KiB | 00m00s [ 65/152] Installing pcre2-utf16-0:10.4 100% | 306.2 MiB/s | 627.1 KiB | 00m00s [ 66/152] Installing pcre2-devel-0:10.4 100% | 110.1 MiB/s | 2.1 MiB | 00m00s [ 67/152] Installing libzstd-devel-0:1. 100% | 203.9 MiB/s | 208.8 KiB | 00m00s [ 68/152] Installing libX11-xcb-0:1.8.1 100% | 0.0 B/s | 11.8 KiB | 00m00s [ 69/152] Installing bzip2-devel-0:1.0. 100% | 303.5 MiB/s | 310.7 KiB | 00m00s [ 70/152] Installing libfontenc-0:1.1.8 100% | 0.0 B/s | 72.3 KiB | 00m00s [ 71/152] Installing google-noto-fonts- 100% | 0.0 B/s | 18.5 KiB | 00m00s [ 72/152] Installing google-noto-sans-v 100% | 347.8 MiB/s | 1.4 MiB | 00m00s [ 73/152] Installing default-fonts-core 100% | 17.8 MiB/s | 18.2 KiB | 00m00s [ 74/152] Installing tzdata-java-0:2025 100% | 0.0 B/s | 100.5 KiB | 00m00s [ 75/152] Installing lksctp-tools-0:1.0 100% | 17.8 MiB/s | 254.7 KiB | 00m00s [ 76/152] Installing javapackages-files 100% | 5.4 MiB/s | 5.5 KiB | 00m00s [ 77/152] Installing java-21-openjdk-he 100% | 450.7 MiB/s | 201.9 MiB | 00m00s [ 78/152] Installing emacs-filesystem-1 100% | 0.0 B/s | 544.0 B | 00m00s [ 79/152] Installing desktop-file-utils 100% | 15.5 MiB/s | 222.2 KiB | 00m00s [ 80/152] Installing xdg-utils-0:1.2.1- 100% | 26.3 MiB/s | 349.5 KiB | 00m00s [ 81/152] Installing libdatrie-0:0.2.13 100% | 57.6 MiB/s | 58.9 KiB | 00m00s [ 82/152] Installing libthai-0:0.1.29-1 100% | 383.4 MiB/s | 785.2 KiB | 00m00s [ 83/152] Installing graphite2-0:1.3.14 100% | 14.9 MiB/s | 197.9 KiB | 00m00s [ 84/152] Installing harfbuzz-0:10.4.0- 100% | 343.6 MiB/s | 2.7 MiB | 00m00s [ 85/152] Installing freetype-0:2.13.3- 100% | 279.9 MiB/s | 859.9 KiB | 00m00s [ 86/152] Installing mkfontscale-0:1.2. 100% | 3.8 MiB/s | 46.4 KiB | 00m00s [ 87/152] Installing ttmkfdir-0:3.0.9-7 100% | 6.5 MiB/s | 119.6 KiB | 00m00s [ 88/152] Installing xml-common-0:0.6.3 100% | 79.2 MiB/s | 81.1 KiB | 00m00s [ 89/152] Installing fontconfig-0:2.16. 100% | 757.4 KiB/s | 783.9 KiB | 00m01s [ 90/152] Installing xorg-x11-fonts-Typ 100% | 836.3 KiB/s | 865.6 KiB | 00m01s [ 91/152] Installing tre-common-0:0.8.0 100% | 81.2 MiB/s | 83.1 KiB | 00m00s [ 92/152] Installing tre-0:0.8.0-47.201 100% | 74.8 MiB/s | 76.6 KiB | 00m00s [ 93/152] Installing tre-devel-0:0.8.0- 100% | 0.0 B/s | 11.6 KiB | 00m00s [ 94/152] Installing fribidi-0:1.0.16-2 100% | 12.8 MiB/s | 196.8 KiB | 00m00s [ 95/152] Installing libwebp-0:1.5.0-2. 100% | 309.8 MiB/s | 951.8 KiB | 00m00s [ 96/152] Installing liblerc-0:4.0.0-8. 100% | 311.3 MiB/s | 637.6 KiB | 00m00s [ 97/152] Installing jbigkit-libs-0:2.1 100% | 120.5 MiB/s | 123.4 KiB | 00m00s [ 98/152] Installing libtiff-0:4.7.0-3. 100% | 202.3 MiB/s | 621.3 KiB | 00m00s [ 99/152] Installing libX11-common-0:1. 100% | 148.5 MiB/s | 1.2 MiB | 00m00s [100/152] Installing libX11-0:1.8.11-1. 100% | 321.4 MiB/s | 1.3 MiB | 00m00s [101/152] Installing libXext-0:1.3.6-3. 100% | 89.1 MiB/s | 91.2 KiB | 00m00s [102/152] Installing libXrender-0:0.9.1 100% | 0.0 B/s | 51.3 KiB | 00m00s [103/152] Installing libXft-0:2.3.8-8.f 100% | 165.9 MiB/s | 169.9 KiB | 00m00s [104/152] Installing libXi-0:1.8.2-2.fc 100% | 83.7 MiB/s | 85.7 KiB | 00m00s [105/152] Installing libXt-0:1.3.1-2.fc 100% | 210.4 MiB/s | 430.9 KiB | 00m00s [106/152] Installing libXmu-0:1.2.1-3.f 100% | 196.6 MiB/s | 201.3 KiB | 00m00s [107/152] Installing libXtst-0:1.2.5-2. 100% | 5.6 MiB/s | 34.6 KiB | 00m00s [108/152] Installing tk8-1:8.6.15-5.fc4 100% | 127.4 MiB/s | 3.2 MiB | 00m00s [109/152] Installing libXcomposite-0:0. 100% | 44.9 MiB/s | 46.0 KiB | 00m00s [110/152] Installing java-21-openjdk-1: 100% | 104.7 MiB/s | 1.0 MiB | 00m00s [111/152] Installing java-21-openjdk-de 100% | 243.7 MiB/s | 11.2 MiB | 00m00s [112/152] Installing libX11-devel-0:1.8 100% | 74.6 MiB/s | 1.1 MiB | 00m00s [113/152] Installing pixman-0:0.44.2-2. 100% | 329.7 MiB/s | 675.3 KiB | 00m00s [114/152] Installing cairo-0:1.18.2-3.f 100% | 356.6 MiB/s | 1.8 MiB | 00m00s [115/152] Installing pango-0:1.56.3-1.f 100% | 61.4 MiB/s | 1.0 MiB | 00m00s [116/152] Installing zlib-ng-0:2.2.4-3. 100% | 154.7 MiB/s | 158.4 KiB | 00m00s [117/152] Installing glpk-0:5.0-13.fc42 100% | 298.2 MiB/s | 915.9 KiB | 00m00s [118/152] Installing gmp-c++-1:6.3.0-4. 100% | 7.0 MiB/s | 28.5 KiB | 00m00s [119/152] Installing tzdata-0:2025b-1.f 100% | 63.1 MiB/s | 1.9 MiB | 00m00s [120/152] Installing less-0:668-2.fc42. 100% | 13.8 MiB/s | 409.1 KiB | 00m00s [121/152] Installing R-core-0:4.5.0-3.f 100% | 256.3 MiB/s | 105.9 MiB | 00m00s [122/152] Installing R-CRAN-cli-0:3.6.4 100% | 191.6 MiB/s | 2.5 MiB | 00m00s [123/152] Installing R-CRAN-rlang-0:1.1 100% | 160.1 MiB/s | 2.7 MiB | 00m00s [124/152] Installing R-CRAN-glue-0:1.8. 100% | 116.2 MiB/s | 357.1 KiB | 00m00s [125/152] Installing R-CRAN-lifecycle-0 100% | 145.2 MiB/s | 297.3 KiB | 00m00s [126/152] Installing R-core-devel-0:4.5 100% | 203.9 MiB/s | 417.5 KiB | 00m00s [127/152] Installing R-CRAN-vctrs-0:0.6 100% | 201.8 MiB/s | 2.4 MiB | 00m00s [128/152] Installing R-littler-0:0.3.19 100% | 7.8 MiB/s | 167.0 KiB | 00m00s [129/152] Installing R-CRAN-Rcpp-0:1.0. 100% | 284.1 MiB/s | 8.5 MiB | 00m00s [130/152] Installing R-CRAN-R6-0:2.6.1- 100% | 126.4 MiB/s | 129.4 KiB | 00m00s [131/152] Installing R-CRAN-RColorBrewe 100% | 67.9 MiB/s | 69.6 KiB | 00m00s [132/152] Installing R-CRAN-farver-0:2. 100% | 344.2 MiB/s | 2.1 MiB | 00m00s [133/152] Installing R-CRAN-labeling-0: 100% | 50.7 MiB/s | 103.9 KiB | 00m00s [134/152] Installing R-CRAN-viridisLite 100% | 434.9 MiB/s | 1.3 MiB | 00m00s [135/152] Installing R-CRAN-magrittr-0: 100% | 105.9 MiB/s | 433.8 KiB | 00m00s [136/152] Installing R-CRAN-pkgconfig-0 100% | 39.3 MiB/s | 40.2 KiB | 00m00s [137/152] Installing R-rpm-macros-0:1.2 100% | 6.4 MiB/s | 6.6 KiB | 00m00s [138/152] Installing R-CRAN-colorspace- 100% | 274.2 MiB/s | 4.1 MiB | 00m00s [139/152] Installing R-CRAN-munsell-0:0 100% | 128.2 MiB/s | 393.8 KiB | 00m00s [140/152] Installing R-CRAN-lattice-0:0 100% | 161.7 MiB/s | 2.1 MiB | 00m00s [141/152] Installing R-CRAN-Matrix-0:1. 100% | 162.6 MiB/s | 8.6 MiB | 00m00s [142/152] Installing R-java-0:4.5.0-3.f 100% | 0.0 B/s | 124.0 B | 00m00s [143/152] Installing R-java-devel-0:4.5 100% | 0.0 B/s | 124.0 B | 00m00s [144/152] Installing R-devel-0:4.5.0-3. 100% | 60.5 KiB/s | 124.0 B | 00m00s [145/152] Installing R-CRAN-igraph-0:2. 100% | 233.5 MiB/s | 10.5 MiB | 00m00s [146/152] Installing R-CRAN-scales-0:1. 100% | 129.8 MiB/s | 1.2 MiB | 00m00s [147/152] Installing R-CRAN-RcppEigen-0 100% | 194.3 MiB/s | 9.1 MiB | 00m00s [148/152] Installing R-CRAN-BH-0:1.87.0 100% | 289.4 MiB/s | 124.7 MiB | 00m00s [149/152] Installing R-CRAN-FNN-0:1.1.4 100% | 120.1 MiB/s | 246.0 KiB | 00m00s [150/152] Installing gmp-devel-1:6.3.0- 100% | 345.8 MiB/s | 354.1 KiB | 00m00s [151/152] Installing annobin-plugin-gcc 100% | 69.3 MiB/s | 993.4 KiB | 00m00s [152/152] Installing gcc-plugin-annobin 100% | 190.2 KiB/s | 58.8 KiB | 00m00s Warning: skipped OpenPGP checks for 29 packages from repository: copr_base Complete! Finish: build setup for R-CRAN-TDA-1.9.4-1.fc42.copr8933184.src.rpm Start: rpmbuild R-CRAN-TDA-1.9.4-1.fc42.copr8933184.src.rpm Building target platforms: x86_64 Building for target x86_64 warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.cmOA1R Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Thnnue + umask 022 + cd /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build + cd /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build + rm -rf TDA + /usr/bin/mkdir -p TDA + cd TDA + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/TDA_1.9.4.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d TDA/src ']' + find TDA/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';' + '[' -d TDA/src ']' + find TDA/src/Makevars -type f -exec sed -i s@-g0@@g '{}' ';' + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.OuGykb + umask 022 + cd /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd TDA + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.rQXTzV + umask 022 + cd /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build + '[' /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build/BUILDROOT ++ dirname /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build/BUILDROOT + mkdir -p /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build + mkdir /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd TDA + mkdir -p /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build/BUILDROOT/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build/BUILDROOT/usr/local/lib/R/library TDA * installing *source* package ‘TDA’ ... ** this is package ‘TDA’ version ‘1.9.4’ ** package ‘TDA’ successfully unpacked and MD5 sums checked ** using staged installation ** libs /bin/sh: line 1: clang++: command not found expr: syntax error: unexpected argument ‘50000’ using C++ compiler: ‘g++ (GCC) 15.0.1 20250329 (Red Hat 15.0.1-0)’ using C++17 /bin/sh: line 1: clang++: command not found expr: syntax error: unexpected argument ‘50000’ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I. -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -DBOOST_DISABLE_THREADS -DCGAL_EIGEN3_ENABLED -DCGAL_HEADER_ONLY -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c RcppExports.cpp -o RcppExports.o In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:205, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:28, from /usr/local/lib/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:174: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:165: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here 24 | ResAlignment = traits >::Alignment | ^~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:271: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here 27 | { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here 98 | ResAlignment = traits >::Alignment | ^~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here 102 | { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/SparseCore:37, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Sparse:26, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:29: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here 61 | typedef Triplet T; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I. -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -DBOOST_DISABLE_THREADS -DCGAL_EIGEN3_ENABLED -DCGAL_HEADER_ONLY -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c diag.cpp -o diag.o In file included from ./CGAL/license/Triangulation.h:17, from ./CGAL/Delaunay_triangulation.h:15, from ./gudhi/Alpha_complex.h:26, from ./tdautils/gudhiUtils.h:13, from diag.cpp:19: ./CGAL/config.h:124:9: warning: ‘BOOST_PARAMETER_MAX_ARITY’ redefined 124 | #define BOOST_PARAMETER_MAX_ARITY 12 | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/BH/include/boost/parameter/aux_/is_tagged_argument.hpp:17, from /usr/local/lib/R/library/BH/include/boost/parameter/is_argument_pack.hpp:9, from /usr/local/lib/R/library/BH/include/boost/graph/named_function_params.hpp:20, from /usr/local/lib/R/library/BH/include/boost/graph/depth_first_search.hpp:21, from /usr/local/lib/R/library/BH/include/boost/graph/max_cardinality_matching.hpp:21, from ./topology/persistence-diagram.hpp:144, from ./topology/persistence-diagram.h:176, from ./tdautils/ripsL2.h:9, from diag.cpp:9: /usr/local/lib/R/library/BH/include/boost/parameter/config.hpp:61:9: note: this is the location of the previous definition 61 | #define BOOST_PARAMETER_MAX_ARITY BOOST_MPL_LIMIT_VECTOR_SIZE | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./CGAL/config.h:161: ./CGAL/internal/enable_third_party_libraries.h:34:6: warning: #warning " cannot be found and the GMP support in CGAL requires it. Less efficient number types will be used instead. Define CGAL_NO_GMP=1 if that is on purpose." [-Wcpp] 34 | # warning " cannot be found and the GMP support in CGAL requires it. Less efficient number types will be used instead. Define CGAL_NO_GMP=1 if that is on purpose." | ^~~~~~~ In file included from ./phat/representations/bit_tree_pivot_column.h:22, from ./phat/boundary_matrix.h:22, from ./phat/compute_persistence_pairs.h:22, from ./tdautils/phatUtils.h:5, from diag.cpp:25: ./phat/representations/abstract_pivot_column.h:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 66 | #pragma omp parallel for ./phat/representations/abstract_pivot_column.h:81: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 81 | #pragma omp parallel for ./phat/boundary_matrix.h:182: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 182 | #pragma omp parallel for private( temp_col ) In file included from ./phat/compute_persistence_pairs.h:23: ./phat/helpers/dualize.h:46: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 46 | #pragma omp parallel for ./phat/helpers/dualize.h:57: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 57 | #pragma omp parallel for ./phat/helpers/dualize.h:61: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 61 | #pragma omp parallel for In file included from ./tdautils/phatUtils.h:12: ./phat/algorithms/chunk_reduction.h:55: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 55 | #pragma omp parallel for schedule( guided, 1 ) ./phat/algorithms/chunk_reduction.h:62: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 62 | #pragma omp parallel for schedule( guided, 1 ) ./phat/algorithms/chunk_reduction.h:76: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 76 | #pragma omp parallel for ./phat/algorithms/chunk_reduction.h:85: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 85 | #pragma omp parallel for schedule( guided, 1 ), private( temp_col ) ./phat/algorithms/chunk_reduction.h:152: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 152 | #pragma omp parallel for schedule( guided, 1 ), private( stack, cur_col_values ) In file included from /usr/local/lib/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /usr/local/lib/R/library/BH/include/boost/mpl/arg.hpp:25, from /usr/local/lib/R/library/BH/include/boost/mpl/placeholders.hpp:24, from /usr/local/lib/R/library/BH/include/boost/iterator/iterator_categories.hpp:16, from /usr/local/lib/R/library/BH/include/boost/iterator/advance.hpp:12, from /usr/local/lib/R/library/BH/include/boost/next_prior.hpp:24, from ./tdautils/ripsL2.h:3: /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/local/lib/R/library/BH/include/boost/property_map/vector_property_map.hpp:14, from /usr/local/lib/R/library/BH/include/boost/property_map/property_map.hpp:598, from ./utilities/property-maps.h:6, from ./topology/complex-traits.h:6, from ./topology/filtration.h:7, from ./tdautils/ripsL2.h:6: /usr/local/lib/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:326:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 326 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ In file included from /usr/include/c++/15/memory:80, from /usr/local/lib/R/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/local/lib/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:23: /usr/include/c++/15/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:354:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 354 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:365:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 365 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:423:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 423 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:430:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 430 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)’: /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:432:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 432 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ In file included from /usr/local/lib/R/library/BH/include/boost/bind/mem_fn.hpp:23, from /usr/local/lib/R/library/BH/include/boost/bind/bind.hpp:23, from /usr/local/lib/R/library/BH/include/boost/multi_index/detail/ord_index_impl.hpp:82, from /usr/local/lib/R/library/BH/include/boost/multi_index/ordered_index.hpp:17, from ./topology/filtration.h:14: /usr/local/lib/R/library/BH/include/boost/get_pointer.hpp: At global scope: /usr/local/lib/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 48 | template T * get_pointer(std::auto_ptr const& p) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ In file included from /usr/local/lib/R/library/BH/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/local/lib/R/library/BH/include/boost/smart_ptr/detail/sp_counted_base.hpp:22, from /usr/local/lib/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:22: /usr/local/lib/R/library/BH/include/boost/config/pragma_message.hpp:24:34: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) | ^~~~~~~ /usr/local/lib/R/library/BH/include/boost/bind.hpp:36:1: note: in expansion of macro ‘BOOST_PRAGMA_MESSAGE’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from ./topology/dynamic-persistence.h:332, from ./tdautils/ripsL2.h:8: ./topology/dynamic-persistence.hpp: In member function ‘bool DynamicPersistenceTrails::transpose(iterator, const DimensionFunctor&, Visitor)’: ./topology/dynamic-persistence.hpp:60:73: warning: typedef ‘TrailIterator’ locally defined but not used [-Wunused-local-typedefs] 60 | typedef typename Element::Trail::iterator TrailIterator; | ^~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/BH/include/boost/scoped_ptr.hpp:13, from /usr/local/lib/R/library/BH/include/boost/graph/adjacency_list.hpp:22, from ./topology/persistence-diagram.hpp:143: /usr/local/lib/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope: /usr/local/lib/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:75:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | explicit scoped_ptr( std::auto_ptr p ) noexcept : px( p.release() ) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:205, from ./gudhi/Alpha_complex/Alpha_kernel_d.h:16, from ./gudhi/Alpha_complex.h:15: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:174: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:165: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here 24 | ResAlignment = traits >::Alignment | ^~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:271: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here 27 | { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here 98 | ResAlignment = traits >::Alignment | ^~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here 102 | { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from diag.cpp:30: ./alphaComplex.h: In function ‘void alphaComplexDiag(const RealMatrix&, unsigned int, unsigned int, int, const std::string&, bool, bool, const Print&, std::vector > >&, std::vector > >&, std::vector > > >&)’: ./alphaComplex.h:45:9: warning: typedef ‘using Point = CGAL::Kernel_d_interface, CGAL::Epick_d > >::Point_d’ locally defined but not used [-Wunused-local-typedefs] 45 | using Point = Kernel::Point_d; | ^~~~~ In file included from diag.cpp:34: ./kde.h: In instantiation of ‘RealVector kde(const RealMatrix&, const RealMatrix&, unsigned int, unsigned int, unsigned int, double, const std::string&, const RealVector&, bool, const Print&) [with RealVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...); std::string = std::__cxx11::basic_string]’: diag.cpp:174:13: required from here 174 | return kde( | ~~~^ 175 | X, Grid, X.nrow(), Grid.ncol(), Grid.nrow(), h, kertype, weight, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 | printProgress, Rprintf); | ~~~~~~~~~~~~~~~~~~~~~~~ ./kde.h:21:16: warning: unused variable ‘pi’ [-Wunused-variable] 21 | const double pi = 3.141592653589793; | ^~ In file included from diag.cpp:16: ./tdautils/typecastUtils.h: In instantiation of ‘RcppList filtrationGudhiToRcpp(const SimplexTree&) [with RcppList = Rcpp::Vector<19>; RcppVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; SimplexTree = Gudhi::Simplex_tree<>]’: diag.cpp:416:63: required from here 416 | filtrationGudhiToRcpp< Rcpp::List, Rcpp::NumericVector >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 417 | AlphaShapeFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 | X, printProgress, Rprintf, coordinates)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./tdautils/typecastUtils.h:394:12: warning: unused variable ‘iFill’ [-Wunused-variable] 394 | unsigned iFill = 0; | ^~~~~ ./tdautils/typecastUtils.h: In instantiation of ‘void filtrationGudhiToTda(const SimplexTree&, VectorList&, RealVector&, VectorList&) [with IntegerVector = Rcpp::Vector<13>; SimplexTree = Gudhi::Simplex_tree<>; VectorList = Rcpp::Vector<19>; RealVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’: ./rips.h:63:38: required from ‘void ripsFiltration(const RealMatrix&, unsigned int, unsigned int, int, double, const std::string&, const std::string&, bool, const Print&, VectorList&, RealVector&, VectorList&) [with IntVector = Rcpp::Vector<13>; RealMatrix = Rcpp::Matrix<14>; VectorList = Rcpp::Vector<19>; RealVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Print = void(const char*, ...); std::string = std::__cxx11::basic_string]’ 63 | filtrationGudhiToTda< IntVector >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | RipsFiltrationGudhi< Gudhi::Simplex_tree<> >(X, nSample, nDim, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | maxdimension, maxscale, printProgress, print), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | cmplx, values, boundary); | ~~~~~~~~~~~~~~~~~~~~~~~~ diag.cpp:329:40: required from here 329 | ripsFiltration< Rcpp::IntegerVector >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 330 | X, X.nrow(), X.ncol(), maxdimension, maxscale, dist, library, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 | printProgress, Rprintf, cmplx, values, boundary); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./tdautils/typecastUtils.h:350:12: warning: unused variable ‘iFill’ [-Wunused-variable] 350 | unsigned iFill = 0; | ^~~~~ In file included from diag.cpp:13: ./tdautils/gridUtils.h: In instantiation of ‘void addOddTets(int, int, int, int, int, VectorList&) [with VectorList = std::vector >]’: ./tdautils/gridUtils.h:315:14: required from ‘void addAllTetrahedra(int, int, int, int, int, VectorList&) [with VectorList = std::vector >]’ 315 | addOddTets(ncols, nrows, i, j, k, cmplx); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./tdautils/gridUtils.h:363:20: required from ‘void simplicesFromGrid(const DimensionVector&, int, VectorList&) [with DimensionVector = Rcpp::Vector<13>; VectorList = std::vector >]’ 363 | addAllTetrahedra(ncols, nrows, i, j, k, cmplx); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./grid.h:90:22: required from ‘void gridFiltration(const RealVector&, const DimensionVector&, int, const std::string&, bool, const Print&, std::vector&, std::vector&) [with RealVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; DimensionVector = Rcpp::Vector<13>; Print = void(const char*, ...); VertexVector = std::vector; std::string = std::__cxx11::basic_string]’ 90 | simplicesFromGrid(gridDim, maxdimension + 1, cmplx); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ diag.cpp:76:17: required from here 76 | gridFiltration( | ~~~~~~~~~~~~~~^ 77 | FUNvalues, gridDim, maxdimension, decomposition, printProgress, Rprintf, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 | cmplx, values); | ~~~~~~~~~~~~~~ ./tdautils/gridUtils.h:183:13: warning: unused variable ‘value’ [-Wunused-variable] 183 | double value, value2; // max of value and value 2 is the fcn value. | ^~~~~ ./tdautils/gridUtils.h:183:20: warning: unused variable ‘value2’ [-Wunused-variable] 183 | double value, value2; // max of value and value 2 is the fcn value. | ^~~~~~ In file included from /usr/local/lib/R/library/BH/include/boost/concept/assert.hpp:35, from /usr/local/lib/R/library/BH/include/boost/property_map/property_map.hpp:19: /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, false> > >]’: /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:167:5: required from ‘struct boost::CopyConstructible > >*, false> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:125:16: required from ‘struct boost::range_detail::IncrementableIteratorConcept > >*, false> >’ 125 | struct IncrementableIteratorConcept : CopyConstructible | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept > >*, false> >’ 147 | struct SinglePassIteratorConcept | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept > >*, false> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, false> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:31, from /usr/local/lib/R/library/BH/include/boost/property_map/property_map.hpp:20: /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible > >*, false> >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]’: /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: required from ‘struct boost::Convertible’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/iterator/iterator_concepts.hpp:114:7: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::Convertible]’: /usr/local/lib/R/library/BH/include/boost/iterator/iterator_concepts.hpp:114:7: required from ‘struct boost::range_detail::IncrementableIteratorConcept > >*, false> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept > >*, false> >’ 147 | struct SinglePassIteratorConcept | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept > >*, false> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, false> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >*, false> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::incrementable_traversal_tag]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, false> > >]’: /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:136:13: required from ‘struct boost::range_detail::IncrementableIteratorConcept > >*, false> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept > >*, false> >’ 147 | struct SinglePassIteratorConcept | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept > >*, false> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, false> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >*, false> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept > >*, false> >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, false> > >]’: /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:233:5: required from ‘struct boost::EqualityComparable > >*, false> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept > >*, false> >’ 147 | struct SinglePassIteratorConcept | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept > >*, false> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, false> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >*, false> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable > >*, false> >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]’: /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: required from ‘struct boost::Convertible’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:152:13: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::Convertible]’: /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:152:13: required from ‘struct boost::range_detail::SinglePassIteratorConcept > >*, false> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept > >*, false> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, false> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >*, false> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >*, false> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:278:9: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::single_pass_traversal_tag]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, false> > >]’: /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: required from ‘struct boost::range_detail::SinglePassIteratorConcept > >*, false> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept > >*, false> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, false> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >*, false> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >*, false> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:278:9: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept > >*, false> >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::range_detail::SinglePassIteratorConcept > >*, false> >]’: /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:278:9: required from ‘struct boost::SinglePassRangeConcept >, std::less, void> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:318:12: required from ‘struct boost::ForwardRangeConcept >, std::less, void> >’ 318 | struct ForwardRangeConcept : SinglePassRangeConcept | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:352:12: required from ‘struct boost::BidirectionalRangeConcept >, std::less, void> >’ 352 | struct BidirectionalRangeConcept : ForwardRangeConcept | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::BidirectionalRangeConcept >, std::less, void> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = boost::container::vec_iterator > >*, false>]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, true> > >]’: /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:167:5: required from ‘struct boost::CopyConstructible > >*, true> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:125:16: required from ‘struct boost::range_detail::IncrementableIteratorConcept > >*, true> >’ 125 | struct IncrementableIteratorConcept : CopyConstructible | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept > >*, true> >’ 147 | struct SinglePassIteratorConcept | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept > >*, true> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, true> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible > >*, true> >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, true> > >]’: /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:136:13: required from ‘struct boost::range_detail::IncrementableIteratorConcept > >*, true> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept > >*, true> >’ 147 | struct SinglePassIteratorConcept | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept > >*, true> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, true> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >*, true> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept > >*, true> >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, true> > >]’: /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:233:5: required from ‘struct boost::EqualityComparable > >*, true> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept > >*, true> >’ 147 | struct SinglePassIteratorConcept | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept > >*, true> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, true> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >*, true> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable > >*, true> >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, true> > >]’: /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: required from ‘struct boost::range_detail::SinglePassIteratorConcept > >*, true> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept > >*, true> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, true> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >*, true> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >*, true> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:281:9: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept > >*, true> >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::range_detail::SinglePassIteratorConcept > >*, true> >]’: /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:281:9: required from ‘struct boost::SinglePassRangeConcept >, std::less, void> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:318:12: required from ‘struct boost::ForwardRangeConcept >, std::less, void> >’ 318 | struct ForwardRangeConcept : SinglePassRangeConcept | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:352:12: required from ‘struct boost::BidirectionalRangeConcept >, std::less, void> >’ 352 | struct BidirectionalRangeConcept : ForwardRangeConcept | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::BidirectionalRangeConcept >, std::less, void> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = boost::container::vec_iterator > >*, true>]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >, std::less, void> > >]’: /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:284:9: required from ‘struct boost::SinglePassRangeConcept >, std::less, void> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:318:12: required from ‘struct boost::ForwardRangeConcept >, std::less, void> >’ 318 | struct ForwardRangeConcept : SinglePassRangeConcept | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:352:12: required from ‘struct boost::BidirectionalRangeConcept >, std::less, void> >’ 352 | struct BidirectionalRangeConcept : ForwardRangeConcept | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::BidirectionalRangeConcept >, std::less, void> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::SinglePassRangeConcept >, std::less, void> >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, false> > >]’: /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:137:5: required from ‘struct boost::DefaultConstructible > >*, false> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:181:16: required from ‘struct boost::range_detail::ForwardIteratorConcept > >*, false> >’ 181 | struct ForwardIteratorConcept | ^~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::ForwardIteratorConcept > >*, false> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, false> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >*, false> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::DefaultConstructible > >*, false> >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]’: /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: required from ‘struct boost::Convertible’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:191:13: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::Convertible]’: /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:191:13: required from ‘struct boost::range_detail::ForwardIteratorConcept > >*, false> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::ForwardIteratorConcept > >*, false> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, false> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >*, false> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >*, false> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:321:9: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::forward_traversal_tag]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, false> > >]’: /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:197:13: required from ‘struct boost::range_detail::ForwardIteratorConcept > >*, false> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::ForwardIteratorConcept > >*, false> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, false> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >*, false> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >*, false> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:321:9: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::ForwardIteratorConcept > >*, false> >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::range_detail::ForwardIteratorConcept > >*, false> >]’: /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:321:9: required from ‘struct boost::ForwardRangeConcept >, std::less, void> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:352:12: required from ‘struct boost::BidirectionalRangeConcept >, std::less, void> >’ 352 | struct BidirectionalRangeConcept : ForwardRangeConcept | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::BidirectionalRangeConcept >, std::less, void> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >, std::less, void> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >, std::less, void> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::ForwardIteratorConcept::~ForwardIteratorConcept() [with Iterator = boost::container::vec_iterator > >*, false>]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:197:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 197 | BOOST_CONCEPT_USAGE(ForwardIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, true> > >]’: /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:137:5: required from ‘struct boost::DefaultConstructible > >*, true> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:181:16: required from ‘struct boost::range_detail::ForwardIteratorConcept > >*, true> >’ 181 | struct ForwardIteratorConcept | ^~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::ForwardIteratorConcept > >*, true> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, true> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >*, true> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::DefaultConstructible > >*, true> >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, true> > >]’: /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:197:13: required from ‘struct boost::range_detail::ForwardIteratorConcept > >*, true> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::ForwardIteratorConcept > >*, true> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, true> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >*, true> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >*, true> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:322:9: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::ForwardIteratorConcept > >*, true> >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::range_detail::ForwardIteratorConcept > >*, true> >]’: /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:322:9: required from ‘struct boost::ForwardRangeConcept >, std::less, void> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:352:12: required from ‘struct boost::BidirectionalRangeConcept >, std::less, void> >’ 352 | struct BidirectionalRangeConcept : ForwardRangeConcept | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::BidirectionalRangeConcept >, std::less, void> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >, std::less, void> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >, std::less, void> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::ForwardIteratorConcept::~ForwardIteratorConcept() [with Iterator = boost::container::vec_iterator > >*, true>]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:197:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 197 | BOOST_CONCEPT_USAGE(ForwardIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]’: /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: required from ‘struct boost::Convertible’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:218:14: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::Convertible]’: /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:218:14: required from ‘struct boost::range_detail::BidirectionalIteratorConcept > >*, false> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::BidirectionalIteratorConcept > >*, false> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, false> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >*, false> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >*, false> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:355:9: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::bidirectional_traversal_tag]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, false> > >]’: /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:224:14: required from ‘struct boost::range_detail::BidirectionalIteratorConcept > >*, false> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::BidirectionalIteratorConcept > >*, false> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, false> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >*, false> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >*, false> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:355:9: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::BidirectionalIteratorConcept > >*, false> >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::range_detail::BidirectionalIteratorConcept > >*, false> >]’: /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:355:9: required from ‘struct boost::BidirectionalRangeConcept >, std::less, void> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::BidirectionalRangeConcept >, std::less, void> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >, std::less, void> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >, std::less, void> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::BidirectionalIteratorConcept::~BidirectionalIteratorConcept() [with Iterator = boost::container::vec_iterator > >*, false>]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:224:14: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 224 | BOOST_CONCEPT_USAGE(BidirectionalIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, true> > >]’: /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:224:14: required from ‘struct boost::range_detail::BidirectionalIteratorConcept > >*, true> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::BidirectionalIteratorConcept > >*, true> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, true> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >*, true> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ > >*, true> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:356:9: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::BidirectionalIteratorConcept > >*, true> >]’ 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::range_detail::BidirectionalIteratorConcept > >*, true> >]’: /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:356:9: required from ‘struct boost::BidirectionalRangeConcept >, std::less, void> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::BidirectionalRangeConcept >, std::less, void> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >, std::less, void> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >, std::less, void> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::BidirectionalIteratorConcept::~BidirectionalIteratorConcept() [with Iterator = boost::container::vec_iterator > >*, true>]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:224:14: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 224 | BOOST_CONCEPT_USAGE(BidirectionalIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::BidirectionalRangeConcept >, std::less, void> >]’: /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/local/lib/R/library/BH/include/boost/range/size_type.hpp:20, from /usr/local/lib/R/library/BH/include/boost/range/size.hpp:21, from /usr/local/lib/R/library/BH/include/boost/range/functions.hpp:20, from /usr/local/lib/R/library/BH/include/boost/range/iterator_range_core.hpp:38, from /usr/local/lib/R/library/BH/include/boost/range/iterator_range.hpp:13, from /usr/local/lib/R/library/BH/include/boost/range/irange.hpp:16, from /usr/local/lib/R/library/BH/include/boost/graph/detail/adjacency_list.hpp:21, from /usr/local/lib/R/library/BH/include/boost/graph/adjacency_list.hpp:255: /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:352:12: note: in a call to non-static member function ‘boost::BidirectionalRangeConcept >, std::less, void> >::~BidirectionalRangeConcept()’ 352 | struct BidirectionalRangeConcept : ForwardRangeConcept | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ ./CGAL/NewKernel_d/function_objects_cartesian.h:659:14: required from ‘CGAL::CartesianDKernelFunctors::Construct_circumcenter::result_type CGAL::CartesianDKernelFunctors::Construct_circumcenter::operator()(Iter, Iter) const [with Iter = CGAL::transforming_iterator >*, std::vector >, std::allocator > > > >, CGAL::Default, CGAL::Default>; R_ = CGAL::Epick_d_help3; result_type = std::vector]’ 659 | Matrix m(d,d); | ^ ./CGAL/NewKernel_d/function_objects_cartesian.h:733:17: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::Matrix >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl >, Eigen::Matrix, Eigen::Dense>’ 86 | class SolveImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve >, Eigen::Matrix >’ 62 | class Solve : public SolveImpl::StorageKind> | ^~~~~ ./CGAL/NewKernel_d/function_objects_cartesian.h:674:37: required from ‘CGAL::CartesianDKernelFunctors::Construct_circumcenter::result_type CGAL::CartesianDKernelFunctors::Construct_circumcenter::operator()(Iter, Iter) const [with Iter = CGAL::transforming_iterator >*, std::vector >, std::allocator > > > >, CGAL::Default, CGAL::Default>; R_ = CGAL::Epick_d_help3; result_type = std::vector]’ 674 | Vec res=m.partialPivLu().solve(b); | ~~~~~~~~~~~~~~~~~~~~~~^~~ ./CGAL/NewKernel_d/function_objects_cartesian.h:733:17: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1>, Eigen::Matrix >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1>, Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1>, Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl, 1>, Eigen::Matrix, Eigen::Dense>’ 86 | class SolveImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve, 1>, Eigen::Matrix >’ 62 | class Solve : public SolveImpl::StorageKind> | ^~~~~ ./CGAL/NewKernel_d/function_objects_cartesian.h:706:29: required from ‘CGAL::CartesianDKernelFunctors::Construct_circumcenter::result_type CGAL::CartesianDKernelFunctors::Construct_circumcenter::operator()(Iter, Iter) const [with Iter = CGAL::transforming_iterator >*, std::vector >, std::allocator > > > >, CGAL::Default, CGAL::Default>; R_ = CGAL::Epick_d_help3; result_type = std::vector]’ 706 | Vec res=m.ldlt().solve(b); | ~~~~~~~~~~~~~~^~~ ./CGAL/NewKernel_d/function_objects_cartesian.h:733:17: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible > >*, false> >]’: /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, false> > >]’ 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:167:5: required from ‘struct boost::CopyConstructible > >*, false> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:125:16: required from ‘struct boost::range_detail::IncrementableIteratorConcept > >*, false> >’ 125 | struct IncrementableIteratorConcept : CopyConstructible | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept > >*, false> >’ 147 | struct SinglePassIteratorConcept | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept > >*, false> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::CopyConstructible::~CopyConstructible() [with TT = boost::container::vec_iterator > >*, false>]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:167:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 167 | BOOST_CONCEPT_USAGE(CopyConstructible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]’: /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]’ 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: required from ‘struct boost::Convertible’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::incrementable_traversal_tag]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept > >*, false> >]’: /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, false> > >]’ 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:136:13: required from ‘struct boost::range_detail::IncrementableIteratorConcept > >*, false> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept > >*, false> >’ 147 | struct SinglePassIteratorConcept | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept > >*, false> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, false> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::IncrementableIteratorConcept::~IncrementableIteratorConcept() [with Iterator = boost::container::vec_iterator > >*, false>]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:136:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 136 | BOOST_CONCEPT_USAGE(IncrementableIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable > >*, false> >]’: /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, false> > >]’ 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:233:5: required from ‘struct boost::EqualityComparable > >*, false> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept > >*, false> >’ 147 | struct SinglePassIteratorConcept | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept > >*, false> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, false> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::EqualityComparable::~EqualityComparable() [with TT = boost::container::vec_iterator > >*, false>]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:233:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 233 | BOOST_CONCEPT_USAGE(EqualityComparable) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]’: /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]’ 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: required from ‘struct boost::Convertible’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::single_pass_traversal_tag]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept > >*, false> >]’: /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, false> > >]’ 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: required from ‘struct boost::range_detail::SinglePassIteratorConcept > >*, false> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept > >*, false> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, false> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >*, false> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = boost::container::vec_iterator > >*, false>]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible > >*, true> >]’: /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, true> > >]’ 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:167:5: required from ‘struct boost::CopyConstructible > >*, true> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:125:16: required from ‘struct boost::range_detail::IncrementableIteratorConcept > >*, true> >’ 125 | struct IncrementableIteratorConcept : CopyConstructible | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept > >*, true> >’ 147 | struct SinglePassIteratorConcept | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept > >*, true> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::CopyConstructible::~CopyConstructible() [with TT = boost::container::vec_iterator > >*, true>]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:167:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 167 | BOOST_CONCEPT_USAGE(CopyConstructible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept > >*, true> >]’: /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, true> > >]’ 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:136:13: required from ‘struct boost::range_detail::IncrementableIteratorConcept > >*, true> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept > >*, true> >’ 147 | struct SinglePassIteratorConcept | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept > >*, true> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, true> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::IncrementableIteratorConcept::~IncrementableIteratorConcept() [with Iterator = boost::container::vec_iterator > >*, true>]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:136:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 136 | BOOST_CONCEPT_USAGE(IncrementableIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable > >*, true> >]’: /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, true> > >]’ 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:233:5: required from ‘struct boost::EqualityComparable > >*, true> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept > >*, true> >’ 147 | struct SinglePassIteratorConcept | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept > >*, true> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, true> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::EqualityComparable::~EqualityComparable() [with TT = boost::container::vec_iterator > >*, true>]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:233:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 233 | BOOST_CONCEPT_USAGE(EqualityComparable) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept > >*, true> >]’: /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, true> > >]’ 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: required from ‘struct boost::range_detail::SinglePassIteratorConcept > >*, true> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept > >*, true> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, true> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >*, true> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = boost::container::vec_iterator > >*, true>]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::SinglePassRangeConcept >, std::less, void> >]’: /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >, std::less, void> > >]’ 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:284:9: required from ‘struct boost::SinglePassRangeConcept >, std::less, void> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:318:12: required from ‘struct boost::ForwardRangeConcept >, std::less, void> >’ 318 | struct ForwardRangeConcept : SinglePassRangeConcept | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:352:12: required from ‘struct boost::BidirectionalRangeConcept >, std::less, void> >’ 352 | struct BidirectionalRangeConcept : ForwardRangeConcept | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::BidirectionalRangeConcept >, std::less, void> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::SinglePassRangeConcept::~SinglePassRangeConcept() [with T = boost::container::flat_map >, std::less, void>]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::DefaultConstructible > >*, false> >]’: /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, false> > >]’ 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:137:5: required from ‘struct boost::DefaultConstructible > >*, false> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:181:16: required from ‘struct boost::range_detail::ForwardIteratorConcept > >*, false> >’ 181 | struct ForwardIteratorConcept | ^~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::ForwardIteratorConcept > >*, false> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, false> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::DefaultConstructible::~DefaultConstructible() [with TT = boost::container::vec_iterator > >*, false>]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:137:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 137 | BOOST_CONCEPT_USAGE(DefaultConstructible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]’: /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]’ 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: required from ‘struct boost::Convertible’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::forward_traversal_tag]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::ForwardIteratorConcept > >*, false> >]’: /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, false> > >]’ 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:197:13: required from ‘struct boost::range_detail::ForwardIteratorConcept > >*, false> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::ForwardIteratorConcept > >*, false> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, false> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >*, false> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::ForwardIteratorConcept::~ForwardIteratorConcept() [with Iterator = boost::container::vec_iterator > >*, false>]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:197:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 197 | BOOST_CONCEPT_USAGE(ForwardIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::DefaultConstructible > >*, true> >]’: /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, true> > >]’ 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:137:5: required from ‘struct boost::DefaultConstructible > >*, true> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:181:16: required from ‘struct boost::range_detail::ForwardIteratorConcept > >*, true> >’ 181 | struct ForwardIteratorConcept | ^~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::ForwardIteratorConcept > >*, true> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, true> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::DefaultConstructible::~DefaultConstructible() [with TT = boost::container::vec_iterator > >*, true>]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:137:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 137 | BOOST_CONCEPT_USAGE(DefaultConstructible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::ForwardIteratorConcept > >*, true> >]’: /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, true> > >]’ 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:197:13: required from ‘struct boost::range_detail::ForwardIteratorConcept > >*, true> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::ForwardIteratorConcept > >*, true> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, true> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >*, true> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::ForwardIteratorConcept::~ForwardIteratorConcept() [with Iterator = boost::container::vec_iterator > >*, true>]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:197:13: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 197 | BOOST_CONCEPT_USAGE(ForwardIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]’: /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]’ 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: required from ‘struct boost::Convertible’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::bidirectional_traversal_tag]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::BidirectionalIteratorConcept > >*, false> >]’: /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, false> > >]’ 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:224:14: required from ‘struct boost::range_detail::BidirectionalIteratorConcept > >*, false> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::BidirectionalIteratorConcept > >*, false> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, false> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >*, false> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::BidirectionalIteratorConcept::~BidirectionalIteratorConcept() [with Iterator = boost::container::vec_iterator > >*, false>]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:224:14: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 224 | BOOST_CONCEPT_USAGE(BidirectionalIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::BidirectionalIteratorConcept > >*, true> >]’: /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >*, true> > >]’ 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:224:14: required from ‘struct boost::range_detail::BidirectionalIteratorConcept > >*, true> >’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::BidirectionalIteratorConcept > >*, true> >]’ 32 | inline yes has_constraints_(Model*, wrap_constraints* = 0); | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >*, true> > >::value’ 44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >*, true> > >’ 45 | typedef boost::integral_constant type; | ^~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >, std::less, void> >)>’ 72 | struct requirement_ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/range/adaptor/reversed.hpp:52:13: required from ‘boost::range_detail::reversed_range boost::adaptors::reverse(BidirectionalRange&) [with BidirectionalRange = boost::container::flat_map >, std::less, void>]’ 92 | &::boost::concepts::requirement_::failed> \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Simplex_tree.h:1400:50: required from ‘bool Gudhi::Simplex_tree::make_filtration_non_decreasing() [with SimplexTreeOptions = Gudhi::Simplex_tree_options_full_featured]’ 1400 | for (auto& simplex : boost::adaptors::reverse(root_.members())) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:463:47: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 463 | complex.make_filtration_non_decreasing(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::range_detail::BidirectionalIteratorConcept::~BidirectionalIteratorConcept() [with Iterator = boost::container::vec_iterator > >*, true>]’ 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:224:14: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’ 224 | BOOST_CONCEPT_USAGE(BidirectionalIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true>, -1, 1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true>, -1, 1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, -1, 1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, false>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, false>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, false>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false>, 1, -1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false>, 1, -1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false>, 1, -1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Matrix, Eigen::Dense>’ 94 | class CwiseUnaryOpImpl | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Matrix >’ 55 | class CwiseUnaryOp : public CwiseUnaryOpImpl::StorageKind>, internal::no_assignment_operator | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:533:30: required from ‘void Eigen::PartialPivLU::compute() [with _MatrixType = Eigen::Matrix]’ 533 | m_l1_norm = m_lu.cwiseAbs().colwise().sum().maxCoeff(); | ~~~~~~~~~~~~~^~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:133:14: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, Eigen::internal::member_sum, 0>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix >, Eigen::internal::member_sum, 0> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix >, Eigen::internal::member_sum, 0> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:56:7: required from ‘class Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 0>’ 56 | class PartialReduxExpr : public internal::dense_xpr_base< PartialReduxExpr >::type, | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:533:46: required from ‘void Eigen::PartialPivLU::compute() [with _MatrixType = Eigen::Matrix]’ 533 | m_l1_norm = m_lu.cwiseAbs().colwise().sum().maxCoeff(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:133:14: required from ‘Eigen::PartialPivLU& Eigen::PartialPivLU::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’ 133 | compute(); | ~~~~~~~^~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:315:10: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, 0>’ 63 | template class Diagonal | ^~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:325:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, -1, 1, false>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0>, -1, 1, false>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0>, -1, 1, false>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0>, -1, 1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0>, -1, 1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0>, -1, 1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, 0>, -1, 1, false> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, 0>, -1, 1, false> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, 0>, -1, 1, false> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, 0>, -1, 1, false>, Eigen::Dense>’ 94 | class CwiseUnaryOpImpl | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, 0>, -1, 1, false> >’ 55 | class CwiseUnaryOp : public CwiseUnaryOpImpl::StorageKind>, internal::no_assignment_operator | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:325:43: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ 325 | mat.diagonal().tail(size-k).cwiseAbs().maxCoeff(&index_of_biggest_in_corner); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 1, -1, false>, Eigen::Dense>’ 118 | template class TransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 1, -1, false> >’ 52 | template class Transpose | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:358:80: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1, 7>’ 120 | class dense_product_base | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1, Eigen::Dense>’ 152 | class ProductImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:358:67: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, Eigen::Block, -1, 1, false>, 0>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:126:7: required from ‘class Eigen::internal::dense_product_base, 1, -1, false>, Eigen::Block, -1, 1, false>, 0, 6>’ 126 | class dense_product_base | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 1, -1, false>, Eigen::Block, -1, 1, false>, 0, Eigen::Dense>’ 152 | class ProductImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 1, -1, false>, Eigen::Block, -1, 1, false>, 0>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:359:35: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:179:81: required from ‘class Eigen::DenseBase, 1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’ 179 | typedef typename internal::find_best_packet::type PacketScalar; | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:126:7: required from ‘class Eigen::internal::dense_product_base, 1, -1, false>, Eigen::Block, -1, 1, false>, 0, 6>’ 126 | class dense_product_base | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 1, -1, false>, Eigen::Block, -1, 1, false>, 0, Eigen::Dense>’ 152 | class ProductImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 1, -1, false>, Eigen::Block, -1, 1, false>, 0>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:359:35: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, Eigen::Block, -1, 1, false>, 0, 7>’ 120 | class dense_product_base | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, -1, -1, false>, Eigen::Block, -1, 1, false>, 0, Eigen::Dense>’ 152 | class ProductImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:32: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> >, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> >, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true>, -1, 1, false> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1, true>, -1, 1, false> > >’ 39 | template class ArrayBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, -1, 1, true>, -1, 1, false> >’ 42 | class ArrayWrapper : public ArrayBase > | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:379:56: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Array >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Array > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, Eigen::Array > >’ 39 | template class ArrayBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Array >’ 60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp >::type, internal::no_assignment_operator | ^~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::ArrayWrapper, -1, 1, true>, -1, 1, false> >, const Eigen::CwiseNullaryOp, Eigen::Array > > >’ 38 | >::type Scalar; | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, -1, 1, true>, -1, 1, false> >, const Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, -1, 1, false> > >’ 39 | template class ArrayBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, -1, 1, false> >’ 42 | class ArrayWrapper : public ArrayBase > | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:387:32: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::Dense>’ 94 | class CwiseUnaryOpImpl | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >’ 55 | class CwiseUnaryOp : public CwiseUnaryOpImpl::StorageKind>, internal::no_assignment_operator | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:221:22: required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ 221 | return m.cwiseAbs().sum(); | ~~~~~~~~~~^~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, 1, -1, false>, 1, -1, false> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, 1, -1, false>, 1, -1, false>, Eigen::Dense>’ 94 | class CwiseUnaryOpImpl | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, 1, -1, false>, 1, -1, false> >’ 55 | class CwiseUnaryOp : public CwiseUnaryOpImpl::StorageKind>, internal::no_assignment_operator | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:221:22: required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ 221 | return m.cwiseAbs().sum(); | ~~~~~~~~~~^~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >’ 39 | template class ArrayBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:277: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41: required from ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false> >’ 1043 | CoeffReadCost = evaluator::CoeffReadCost, | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1384:41: required from ‘struct Eigen::internal::evaluator_wrapper_base, -1, 1, true>, -1, 1, false> > >’ 1384 | CoeffReadCost = evaluator::CoeffReadCost, | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1464:8: required from ‘struct Eigen::internal::unary_evaluator, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>’ 1464 | struct unary_evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false> > >’ 90 | struct evaluator : public unary_evaluator | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false> > >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1384:41: required from ‘struct Eigen::internal::evaluator_wrapper_base, -1, 1, true>, -1, 1, false> > >’ 1384 | CoeffReadCost = evaluator::CoeffReadCost, | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1464:8: required from ‘struct Eigen::internal::unary_evaluator, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>’ 1464 | struct unary_evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false> > >’ 90 | struct evaluator : public unary_evaluator | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false> > >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::ArrayWrapper, -1, 1, true>, -1, 1, false> >, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ 739 | CoeffReadCost = int(evaluator::CoeffReadCost) + int(evaluator::CoeffReadCost) + int(functor_traits::Cost), | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ 60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp >::type, internal::no_assignment_operator | ^~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:67: required from ‘Derived& Eigen::DenseBase::operator/=(const Scalar&) [with Derived = Eigen::Block, -1, 1, false>; Scalar = double]’ 41 | internal::call_assignment(this->derived(), PlainObject::Constant(rows(),cols(),other), internal::div_assign_op()); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:385:13: required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’ 385 | A21 /= realAkk; | ~~~~^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:526:51: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1384:41: required from ‘struct Eigen::internal::evaluator_wrapper_base, -1, 1, false> > >’ 1384 | CoeffReadCost = evaluator::CoeffReadCost, | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1464:8: required from ‘struct Eigen::internal::unary_evaluator, -1, 1, false> >, Eigen::internal::IndexBased, double>’ 1464 | struct unary_evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, 1, false> > >’ 90 | struct evaluator : public unary_evaluator | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, false> > >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::ArrayWrapper, -1, 1, false> >, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ 739 | CoeffReadCost = int(evaluator::CoeffReadCost) + int(evaluator::CoeffReadCost) + int(functor_traits::Cost), | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<-1, 0> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<-1, 0> >, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<-1, 0> >, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<-1, 0> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<-1, 0> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<-1, 0> >, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, -1, false>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, -1, false>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, -1, false>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, -1, -1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, -1, -1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, -1, -1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, -1, false> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:44:50: required from ‘struct Eigen::internal::traits, 0, Eigen::OuterStride<> > >::match, 0, Eigen::OuterStride<> >, -1, -1, false> >’ 44 | DerivedAlignment = int(evaluator::Alignment), | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:288:101: required by substitution of ‘template Eigen::Ref, 0, Eigen::OuterStride<> >::Ref(const Eigen::DenseBase&, typename Eigen::internal::enable_if<(bool)(Eigen::internal::traits, 0, Eigen::OuterStride<> > >::match::MatchAtCompileTime), Derived>::type*) [with Derived = Eigen::Block, 0, Eigen::OuterStride<> >, -1, -1, false>]’ 288 | typename internal::enable_if::MatchAtCompileTime),Derived>::type* = 0); | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:463:17: required from ‘static Eigen::Index Eigen::internal::partial_lu_impl::blocked_lu(Eigen::Index, Eigen::Index, Scalar*, Eigen::Index, PivIndex*, PivIndex&, Eigen::Index) [with Scalar = double; int StorageOrder = 0; PivIndex = int; int SizeAtCompileTime = -1; Eigen::Index = long int]’ 463 | BlockType A_0 = lu.block(0,0,rows,k); | ^~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:519:17: required from ‘void Eigen::internal::partial_lu_inplace(MatrixType&, TranspositionType&, typename TranspositionType::StorageIndex&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; typename TranspositionType::StorageIndex = int]’ 515 | partial_lu_impl | ~~~~~~~~~~~~~~~ 516 | < typename MatrixType::Scalar, MatrixType::Flags&RowMajorBit?RowMajor:ColMajor, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 | typename TranspositionType::StorageIndex, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 | EIGEN_SIZE_MIN_PREFER_FIXED(MatrixType::RowsAtCompileTime,MatrixType::ColsAtCompileTime)> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 | ::blocked_lu(lu.rows(), lu.cols(), &lu.coeffRef(0,0), lu.outerStride(), &row_transpositions.coeffRef(0), nb_transpositions); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:543:31: required from ‘void Eigen::PartialPivLU::compute() [with _MatrixType = Eigen::Matrix]’ 543 | internal::partial_lu_inplace(m_lu, m_rowsTranspositions, nb_transpositions); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:133:14: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, false>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, false>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, false>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 1, -1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, Eigen::Ref, 0, Eigen::OuterStride<> >, 0>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, Eigen::Ref, 0, Eigen::OuterStride<> >, 0> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, Eigen::Ref, 0, Eigen::OuterStride<> >, 0> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0, Eigen::OuterStride<> >, Eigen::Ref, 0, Eigen::OuterStride<> >, 0, 8>’ 120 | class dense_product_base | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0, Eigen::OuterStride<> >, Eigen::Ref, 0, Eigen::OuterStride<> >, 0, Eigen::Dense>’ 152 | class ProductImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0, Eigen::OuterStride<> >, Eigen::Ref, 0, Eigen::OuterStride<> >, 0>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:495:30: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 2>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 2> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 2> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 2, 7>’ 120 | class dense_product_base | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Matrix, 2, Eigen::Dense>’ 152 | class ProductImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Matrix, 2>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:234:28: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:167:44: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, -1, 1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, -1, 1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, Eigen::Dense>’ 94 | class CwiseUnaryOpImpl | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ 55 | class CwiseUnaryOp : public CwiseUnaryOpImpl::StorageKind>, internal::no_assignment_operator | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:377:43: required from ‘static Eigen::Index Eigen::internal::partial_lu_impl::unblocked_lu(MatrixTypeRef&, PivIndex*, PivIndex&) [with Scalar = double; int StorageOrder = 0; PivIndex = int; int SizeAtCompileTime = -1; Eigen::Index = long int; MatrixTypeRef = Eigen::Ref, 0, Eigen::OuterStride<> >]’ 377 | = lu.col(k).tail(rows-k).unaryExpr(Scoring()).maxCoeff(&row_of_biggest_in_col); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:439:26: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, false>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, false>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, false>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, false>, 0>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, false>, 0> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, false>, 0> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, false>, 0, 5>’ 120 | class dense_product_base | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, false>, 0, Eigen::Dense>’ 152 | class ProductImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, false>, 0>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:400:114: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41: required from ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, false> >’ 1043 | CoeffReadCost = evaluator::CoeffReadCost, | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, false> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’ 564 | CoeffReadCost = int(evaluator::CoeffReadCost) + int(functor_traits::Cost), | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’ 90 | struct evaluator : public unary_evaluator | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’ 357 | class redux_evaluator : public internal::evaluator<_XprType> | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, false> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, false> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’ 564 | CoeffReadCost = int(evaluator::CoeffReadCost) + int(functor_traits::Cost), | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’ 90 | struct evaluator : public unary_evaluator | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’ 357 | class redux_evaluator : public internal::evaluator<_XprType> | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, 1, -1, false>, 1, -1, false> >; typename Eigen::internal::traits::Scalar = double]’ 414 | ThisEvaluator thisEval(derived()); | ^~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0>, -1, 1, false> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0>, -1, 1, false> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, 0>, -1, 1, false> >, Eigen::internal::IndexBased, double>’ 564 | CoeffReadCost = int(evaluator::CoeffReadCost) + int(functor_traits::Cost), | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 0>, -1, 1, false> > >’ 90 | struct evaluator : public unary_evaluator | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:79:51: required from ‘class Eigen::internal::visitor_evaluator, const Eigen::Block, 0>, -1, 1, false> > >’ 79 | CoeffReadCost = internal::evaluator::CoeffReadCost | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:123:17: required from ‘void Eigen::DenseBase::visit(Visitor&) const [with Visitor = Eigen::internal::max_coeff_visitor, const Eigen::Block, 0>, -1, 1, false> >, 0>; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, 0>, -1, 1, false> >]’ 123 | ThisEvaluator thisEval(derived()); | ^~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:374:14: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval, -1, -1, false>, Eigen::Dense>’ 372 | typedef typename plain_matrix_type_dense::XprKind, evaluator::Flags>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45: required from ‘struct Eigen::internal::generic_product_impl, -1, -1, false>, Eigen::Block, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>’ 369 | typedef typename nested_eval::type LhsNested; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42: required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>]’ 178 | generic_product_impl::subTo(dst, src.lhs(), src.rhs()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; Func = sub_assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:59:31: required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; ExpressionType = Eigen::Block, -1, 1, false>; StorageBase = Eigen::MatrixBase]’ 59 | call_assignment_no_alias(m_expression, other.derived(), internal::sub_assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval, -1, 1, false>, Eigen::Dense>’ 372 | typedef typename plain_matrix_type_dense::XprKind, evaluator::Flags>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:370:45: required from ‘struct Eigen::internal::generic_product_impl, -1, -1, false>, Eigen::Block, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>’ 370 | typedef typename nested_eval::type RhsNested; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42: required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>]’ 178 | generic_product_impl::subTo(dst, src.lhs(), src.rhs()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; Func = sub_assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:59:31: required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; ExpressionType = Eigen::Block, -1, 1, false>; StorageBase = Eigen::MatrixBase]’ 59 | call_assignment_no_alias(m_expression, other.derived(), internal::sub_assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:361:25: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 2>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix, 2> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix, 2> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 2, 7>’ 120 | class dense_product_base | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, Eigen::Matrix, 2, Eigen::Dense>’ 152 | class ProductImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Matrix, 2>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:577:26: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0>, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from ‘class Eigen::Diagonal, 0>’ 63 | template class Diagonal | ^~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:587:61: required from ‘void Eigen::LDLT::_solve_impl_transposed(const RhsType&, DstType&) const [with bool Conjugate = true; RhsType = Eigen::Matrix; DstType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ 587 | const typename Diagonal::RealReturnType vecD(vectorD()); | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:569:31: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, 1, false>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, 1, false>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, 1, false>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, 1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, 1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, 1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ 118 | template class TransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ 52 | template class Transpose | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:175:44: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, Eigen::Matrix, 2>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >, Eigen::Matrix, 2> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >, Eigen::Matrix, 2> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base > >, Eigen::Matrix, 2, 7>’ 120 | class dense_product_base | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl > >, Eigen::Matrix, 2, Eigen::Dense>’ 152 | class ProductImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product > >, Eigen::Matrix, 2>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:610:38: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ 60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp >::type, internal::no_assignment_operator | ^~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:67: required from ‘Derived& Eigen::DenseBase::operator/=(const Scalar&) [with Derived = Eigen::Block, 1, 1, false>; Scalar = double]’ 41 | internal::call_assignment(this->derived(), PlainObject::Constant(rows(),cols(),other), internal::div_assign_op()); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:599:18: required from ‘void Eigen::LDLT::_solve_impl_transposed(const RhsType&, DstType&) const [with bool Conjugate = true; RhsType = Eigen::Matrix; DstType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’ 599 | dst.row(i) /= vecD(i); | ~~~~~~~~~~~^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:569:31: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 16, Eigen::Stride<0, 0> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 16, Eigen::Stride<0, 0> >, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 16, Eigen::Stride<0, 0> >, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 16, Eigen::Stride<0, 0> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 16, Eigen::Stride<0, 0> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 16, Eigen::Stride<0, 0> >, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Eigen::Index = long int]’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false> > >; Scalar = double]’ 243 | const Index alignedStart = internal::first_default_aligned(xpr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’ 418 | return internal::redux_impl::run(thisEval, func, derived()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’ 463 | return derived().redux(Eigen::internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:221:28: required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ 221 | return m.cwiseAbs().sum(); | ~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ 269 | return internal::lpNorm_selector::run(*this); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:514:74: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false>, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false> >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:54: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Block, 1, -1, false>; Rhs = Eigen::Block, -1, 1, false>]’ 251 | dst.coeffRef(0,0) = (lhs.transpose().cwiseProduct(rhs)).sum(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ 1043 | CoeffReadCost = evaluator::CoeffReadCost, | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>’ 564 | CoeffReadCost = int(evaluator::CoeffReadCost) + int(functor_traits::Cost), | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’ 90 | struct evaluator : public unary_evaluator | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:79:51: required from ‘class Eigen::internal::visitor_evaluator, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’ 79 | CoeffReadCost = internal::evaluator::CoeffReadCost | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:123:17: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>’ 564 | CoeffReadCost = int(evaluator::CoeffReadCost) + int(functor_traits::Cost), | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’ 90 | struct evaluator : public unary_evaluator | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:79:51: required from ‘class Eigen::internal::visitor_evaluator, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’ 79 | CoeffReadCost = internal::evaluator::CoeffReadCost | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:123:17: required from ‘void Eigen::DenseBase::visit(Visitor&) const [with Visitor = Eigen::internal::max_coeff_visitor, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, 0>; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >]’ 123 | ThisEvaluator thisEval(derived()); | ^~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:374:14: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:330: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘class Eigen::internal::gebp_traits’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverMatrix.h:64:27: required from ‘static void Eigen::internal::triangular_solve_matrix::run(Index, Index, const Scalar*, Index, Scalar*, Index, Index, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 5; bool Conjugate = false; int TriStorageOrder = 0; int OtherInnerStride = 1]’ 64 | SmallPanelWidth = EIGEN_PLAIN_ENUM_MAX(Traits::mr,Traits::nr), | ^~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:102:12: required from ‘static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = Eigen::Ref, 0, Eigen::OuterStride<> >; Rhs = Eigen::Ref, 0, Eigen::OuterStride<> >; int Side = 1; int Mode = 5]’ 100 | triangular_solve_matrix | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 | ::run(size, othersize, &actualLhs.coeffRef(0,0), actualLhs.outerStride(), &rhs.coeffRef(0,0), rhs.innerStride(), rhs.outerStride(), blocking); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182:21: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Ref, 0, Eigen::OuterStride<> >; _MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; unsigned int _Mode = 5]’ 181 | internal::triangular_solver_selector::type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 | Side, Mode>::run(derived().nestedExpression(), otherCopy); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:522:37: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Ref, 0, Eigen::OuterStride<> >; _MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; unsigned int _Mode = 5]’ 522 | { return solveInPlace(other); } | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:493:62: required from ‘static Eigen::Index Eigen::internal::partial_lu_impl::blocked_lu(Eigen::Index, Eigen::Index, Scalar*, Eigen::Index, PivIndex*, PivIndex&, Eigen::Index) [with Scalar = double; int StorageOrder = 0; PivIndex = int; int SizeAtCompileTime = -1; Eigen::Index = long int]’ 493 | A11.template triangularView().solveInPlace(A12); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:519:17: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 433 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 434 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 435 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1, | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 460 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 461 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 462 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 465 | typedef QuadPacket RhsPacketx4; | ^~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘class Eigen::internal::gebp_traits’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1080:42: required from ‘struct Eigen::internal::gebp_kernel, 4, 4, false, false>’ 1080 | typedef typename HalfTraits::LhsPacket LhsPacketHalf; | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverMatrix.h:78:95: required from ‘static void Eigen::internal::triangular_solve_matrix::run(Index, Index, const Scalar*, Index, Scalar*, Index, Index, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 5; bool Conjugate = false; int TriStorageOrder = 0; int OtherInnerStride = 1]’ 78 | gebp_kernel gebp_kernel; | ^~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:102:12: required from ‘static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = Eigen::Ref, 0, Eigen::OuterStride<> >; Rhs = Eigen::Ref, 0, Eigen::OuterStride<> >; int Side = 1; int Mode = 5]’ 100 | triangular_solve_matrix | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 | ::run(size, othersize, &actualLhs.coeffRef(0,0), actualLhs.outerStride(), &rhs.coeffRef(0,0), rhs.innerStride(), rhs.outerStride(), blocking); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182:21: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Ref, 0, Eigen::OuterStride<> >; _MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; unsigned int _Mode = 5]’ 181 | internal::triangular_solver_selector::type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 | Side, Mode>::run(derived().nestedExpression(), otherCopy); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:522:37: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Ref, 0, Eigen::OuterStride<> >; _MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; unsigned int _Mode = 5]’ 522 | { return solveInPlace(other); } | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:493:62: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 433 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 434 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 435 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1, | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 460 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 461 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 462 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 465 | typedef QuadPacket RhsPacketx4; | ^~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘class Eigen::internal::gebp_traits’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1085:45: required from ‘struct Eigen::internal::gebp_kernel, 4, 4, false, false>’ 1085 | typedef typename QuarterTraits::LhsPacket LhsPacketQuarter; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverMatrix.h:78:95: required from ‘static void Eigen::internal::triangular_solve_matrix::run(Index, Index, const Scalar*, Index, Scalar*, Index, Index, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 5; bool Conjugate = false; int TriStorageOrder = 0; int OtherInnerStride = 1]’ 78 | gebp_kernel gebp_kernel; | ^~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:102:12: required from ‘static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = Eigen::Ref, 0, Eigen::OuterStride<> >; Rhs = Eigen::Ref, 0, Eigen::OuterStride<> >; int Side = 1; int Mode = 5]’ 100 | triangular_solve_matrix | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 | ::run(size, othersize, &actualLhs.coeffRef(0,0), actualLhs.outerStride(), &rhs.coeffRef(0,0), rhs.innerStride(), rhs.outerStride(), blocking); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182:21: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Ref, 0, Eigen::OuterStride<> >; _MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; unsigned int _Mode = 5]’ 181 | internal::triangular_solver_selector::type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 | Side, Mode>::run(derived().nestedExpression(), otherCopy); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:522:37: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Ref, 0, Eigen::OuterStride<> >; _MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; unsigned int _Mode = 5]’ 522 | { return solveInPlace(other); } | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:493:62: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 384 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable, | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 433 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 434 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 435 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1, | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 460 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 461 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 462 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 465 | typedef QuadPacket RhsPacketx4; | ^~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::OuterStride<> >’ 94 | template class Map | ^~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:97:18: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, -1, 1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, -1, 1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, -1, 1, true, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Matrix >’ 60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp >::type, internal::no_assignment_operator | ^~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’ 38 | >::type Scalar; | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:125:66: required from ‘static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 5; bool Conjugate = false]’ 125 | Map >(rhs+s,r) -= rhs[i] * cjLhs.col(i).segment(s,r); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:73:12: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:333: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘class Eigen::internal::gemv_traits’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:87:38: required from ‘struct Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>’ 87 | typedef typename Traits::LhsPacket LhsPacket; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:134:115: required from ‘static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 5; bool Conjugate = false]’ 134 | general_matrix_vector_product::run( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 135 | r, actualPanelWidth, | ~~~~~~~~~~~~~~~~~~~~ 136 | LhsMapper(&lhs.coeffRef(endBlock,startBlock), lhsStride), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | RhsMapper(rhs+startBlock, 1), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 | rhs+endBlock, 1, RhsScalar(-1)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:73:12: required from ‘static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Matrix; Rhs = Eigen::Matrix; int Side = 1; int Mode = 5]’ 71 | triangular_solve_vector | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | ::run(actualLhs.cols(), actualLhs.data(), actualLhs.outerStride(), actualRhs); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182:21: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Matrix; _MatrixType = const Eigen::Matrix; unsigned int _Mode = 5]’ 181 | internal::triangular_solver_selector::type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 | Side, Mode>::run(derived().nestedExpression(), otherCopy); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:522:37: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; _MatrixType = const Eigen::Matrix; unsigned int _Mode = 5]’ 522 | { return solveInPlace(other); } | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:237:61: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 52 | unpacket_traits<_RhsPacket>::vectorizable && | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1 | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 59 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 60 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 61 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘class Eigen::internal::gemv_traits’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:91:42: required from ‘struct Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>’ 91 | typedef typename HalfTraits::LhsPacket LhsPacketHalf; | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:134:115: required from ‘static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 5; bool Conjugate = false]’ 134 | general_matrix_vector_product::run( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 135 | r, actualPanelWidth, | ~~~~~~~~~~~~~~~~~~~~ 136 | LhsMapper(&lhs.coeffRef(endBlock,startBlock), lhsStride), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | RhsMapper(rhs+startBlock, 1), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 | rhs+endBlock, 1, RhsScalar(-1)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:73:12: required from ‘static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Matrix; Rhs = Eigen::Matrix; int Side = 1; int Mode = 5]’ 71 | triangular_solve_vector | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | ::run(actualLhs.cols(), actualLhs.data(), actualLhs.outerStride(), actualRhs); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182:21: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Matrix; _MatrixType = const Eigen::Matrix; unsigned int _Mode = 5]’ 181 | internal::triangular_solver_selector::type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 | Side, Mode>::run(derived().nestedExpression(), otherCopy); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:522:37: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; _MatrixType = const Eigen::Matrix; unsigned int _Mode = 5]’ 522 | { return solveInPlace(other); } | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:237:61: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 52 | unpacket_traits<_RhsPacket>::vectorizable && | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1 | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 59 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 60 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 61 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘class Eigen::internal::gemv_traits’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:95:45: required from ‘struct Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>’ 95 | typedef typename QuarterTraits::LhsPacket LhsPacketQuarter; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:134:115: required from ‘static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 5; bool Conjugate = false]’ 134 | general_matrix_vector_product::run( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 135 | r, actualPanelWidth, | ~~~~~~~~~~~~~~~~~~~~ 136 | LhsMapper(&lhs.coeffRef(endBlock,startBlock), lhsStride), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | RhsMapper(rhs+startBlock, 1), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 | rhs+endBlock, 1, RhsScalar(-1)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:73:12: required from ‘static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Matrix; Rhs = Eigen::Matrix; int Side = 1; int Mode = 5]’ 71 | triangular_solve_vector | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | ::run(actualLhs.cols(), actualLhs.data(), actualLhs.outerStride(), actualRhs); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182:21: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Matrix; _MatrixType = const Eigen::Matrix; unsigned int _Mode = 5]’ 181 | internal::triangular_solver_selector::type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 | Side, Mode>::run(derived().nestedExpression(), otherCopy); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:522:37: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; _MatrixType = const Eigen::Matrix; unsigned int _Mode = 5]’ 522 | { return solveInPlace(other); } | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:237:61: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 52 | unpacket_traits<_RhsPacket>::vectorizable && | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1 | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 59 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 60 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 61 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false>, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, 1, -1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, 1, -1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, 1, -1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false>, 1, -1, false, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, true>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, true>, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, false>, -1, 1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, false>, -1, 1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, false>, -1, 1, true>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, false>, -1, 1, true, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, -1, 1, true>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix >, -1, 1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix >, -1, 1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::Matrix >, -1, 1, true, false>’ 172 | template class BlockImpl_dense | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, const Eigen::Matrix >, -1, 1, true, Eigen::Dense>’ 154 | class BlockImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, const Eigen::Matrix >, -1, 1, true>’ 103 | template class Block | ^~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:183:72: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, false> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>; SrcXprType = Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>; Functor = swap_assign_op]’ 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>; SrcXprType = Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>; Functor = Eigen::internal::swap_assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>; Src = Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>; Func = swap_assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>; Src = Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>; Func = swap_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ 858 | call_assignment_no_alias(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:424:22: required from ‘void Eigen::DenseBase::swap(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>; Derived = Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>]’ 424 | call_assignment(derived(), other.const_cast_derived(), internal::swap_assign_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:483:24: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_rhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::blas_data_mapper; int nr = 4; bool Conjugate = false; bool PanelMode = true]’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverMatrix.h:155:19: required from ‘static void Eigen::internal::triangular_solve_matrix::run(Index, Index, const Scalar*, Index, Scalar*, Index, Index, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 5; bool Conjugate = false; int TriStorageOrder = 0; int OtherInnerStride = 1]’ 155 | pack_rhs(blockB+actual_kc*j2, other.getSubMapper(startBlock,j2), actualPanelWidth, actual_cols, actual_kc, blockBOffset); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:102:12: required from ‘static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = Eigen::Ref, 0, Eigen::OuterStride<> >; Rhs = Eigen::Ref, 0, Eigen::OuterStride<> >; int Side = 1; int Mode = 5]’ 100 | triangular_solve_matrix | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 | ::run(size, othersize, &actualLhs.coeffRef(0,0), actualLhs.outerStride(), &rhs.coeffRef(0,0), rhs.innerStride(), rhs.outerStride(), blocking); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182:21: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Ref, 0, Eigen::OuterStride<> >; _MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; unsigned int _Mode = 5]’ 181 | internal::triangular_solver_selector::type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 | Side, Mode>::run(derived().nestedExpression(), otherCopy); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:522:37: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Ref, 0, Eigen::OuterStride<> >; _MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; unsigned int _Mode = 5]’ 522 | { return solveInPlace(other); } | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:493:62: required from ‘static Eigen::Index Eigen::internal::partial_lu_impl::blocked_lu(Eigen::Index, Eigen::Index, Scalar*, Eigen::Index, PivIndex*, PivIndex&, Eigen::Index) [with Scalar = double; int StorageOrder = 0; PivIndex = int; int SizeAtCompileTime = -1; Eigen::Index = long int]’ 493 | A11.template triangularView().solveInPlace(A12); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:519:17: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2459:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2459 | PacketBlock kernel; | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_lhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper; int Pack1 = 4; int Pack2 = 2; Packet = __vector(2) double; bool Conjugate = false; bool PanelMode = false]’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverMatrix.h:162:21: required from ‘static void Eigen::internal::triangular_solve_matrix::run(Index, Index, const Scalar*, Index, Scalar*, Index, Index, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 5; bool Conjugate = false; int TriStorageOrder = 0; int OtherInnerStride = 1]’ 162 | pack_lhs(blockA, tri.getSubMapper(startTarget,startBlock), actualPanelWidth, lengthTarget); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:102:12: required from ‘static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = Eigen::Ref, 0, Eigen::OuterStride<> >; Rhs = Eigen::Ref, 0, Eigen::OuterStride<> >; int Side = 1; int Mode = 5]’ 100 | triangular_solve_matrix | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 | ::run(size, othersize, &actualLhs.coeffRef(0,0), actualLhs.outerStride(), &rhs.coeffRef(0,0), rhs.innerStride(), rhs.outerStride(), blocking); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182:21: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Ref, 0, Eigen::OuterStride<> >; _MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; unsigned int _Mode = 5]’ 181 | internal::triangular_solver_selector::type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 | Side, Mode>::run(derived().nestedExpression(), otherCopy); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:522:37: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Ref, 0, Eigen::OuterStride<> >; _MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; unsigned int _Mode = 5]’ 522 | { return solveInPlace(other); } | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:493:62: required from ‘static Eigen::Index Eigen::internal::partial_lu_impl::blocked_lu(Eigen::Index, Eigen::Index, Scalar*, Eigen::Index, PivIndex*, PivIndex&, Eigen::Index) [with Scalar = double; int StorageOrder = 0; PivIndex = int; int SizeAtCompileTime = -1; Eigen::Index = long int]’ 493 | A11.template triangularView().solveInPlace(A12); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:519:17: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2100:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2100 | typedef typename unpacket_traits::half>::half QuarterPacket; | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2102:56: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2102 | HalfPacketSize = unpacket_traits::size, | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2103:62: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 2103 | QuarterPacketSize = unpacket_traits::size, | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2103:62: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gebp_kernel::operator()(const DataMapper&, const LhsScalar*, const RhsScalar*, Index, Index, Index, ResScalar, Index, Index, Index, Index) [with LhsScalar = double; RhsScalar = double; Index = long int; DataMapper = Eigen::internal::blas_data_mapper; int mr = 4; int nr = 4; bool ConjugateLhs = false; bool ConjugateRhs = false; ResScalar = double]’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverMatrix.h:164:24: required from ‘static void Eigen::internal::triangular_solve_matrix::run(Index, Index, const Scalar*, Index, Scalar*, Index, Index, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 5; bool Conjugate = false; int TriStorageOrder = 0; int OtherInnerStride = 1]’ 164 | gebp_kernel(other.getSubMapper(startTarget,j2), blockA, blockB+actual_kc*j2, lengthTarget, actualPanelWidth, actual_cols, Scalar(-1), | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 | actualPanelWidth, actual_kc, 0, blockBOffset); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:102:12: required from ‘static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = Eigen::Ref, 0, Eigen::OuterStride<> >; Rhs = Eigen::Ref, 0, Eigen::OuterStride<> >; int Side = 1; int Mode = 5]’ 100 | triangular_solve_matrix | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 | ::run(size, othersize, &actualLhs.coeffRef(0,0), actualLhs.outerStride(), &rhs.coeffRef(0,0), rhs.innerStride(), rhs.outerStride(), blocking); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182:21: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Ref, 0, Eigen::OuterStride<> >; _MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; unsigned int _Mode = 5]’ 181 | internal::triangular_solver_selector::type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 | Side, Mode>::run(derived().nestedExpression(), otherCopy); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:522:37: required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Ref, 0, Eigen::OuterStride<> >; _MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; unsigned int _Mode = 5]’ 522 | { return solveInPlace(other); } | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:493:62: required from ‘static Eigen::Index Eigen::internal::partial_lu_impl::blocked_lu(Eigen::Index, Eigen::Index, Scalar*, Eigen::Index, PivIndex*, PivIndex&, Eigen::Index) [with Scalar = double; int StorageOrder = 0; PivIndex = int; int SizeAtCompileTime = -1; Eigen::Index = long int]’ 493 | A11.template triangularView().solveInPlace(A12); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:519:17: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1920:103: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1920 | const int SResPacketHalfSize = unpacket_traits::half>::size; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1921:138: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1921 | const int SResPacketQuarterSize = unpacket_traits::half>::half>::size; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1921:138: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1977:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1977 | typedef typename conditional=8,typename unpacket_traits::half,SResPacket>::type SResPacketHalf; | ^~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1978:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1978 | typedef typename conditional=8,typename unpacket_traits::half,SLhsPacket>::type SLhsPacketHalf; | ^~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1979:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1979 | typedef typename conditional=8,typename unpacket_traits::half,SRhsPacket>::type SRhsPacketHalf; | ^~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1980:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1980 | typedef typename conditional=8,typename unpacket_traits::half,SAccPacket>::type SAccPacketHalf; | ^~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, 0>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, 0> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, 0> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0, Eigen::OuterStride<> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, 0, 7>’ 120 | class dense_product_base | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0, Eigen::OuterStride<> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, 0, Eigen::Dense>’ 152 | class ProductImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0, Eigen::OuterStride<> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, 0>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, -1, 1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, -1, 1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, -1, 1, true, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval, 0, Eigen::OuterStride<> >, -1, 1, true>, Eigen::Dense>’ 372 | typedef typename plain_matrix_type_dense::XprKind, evaluator::Flags>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:370:45: required from ‘struct Eigen::internal::generic_product_impl, 0, Eigen::OuterStride<> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, Eigen::DenseShape, Eigen::DenseShape, 7>’ 370 | typedef typename nested_eval::type RhsNested; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:479:24: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Ref, 0, Eigen::OuterStride<> >; Lhs = Eigen::Ref, 0, Eigen::OuterStride<> >; Rhs = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double]’ 478 | return internal::generic_product_impl | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 | ::scaleAndAddTo(dst_vec, a_lhs, a_rhs.col(0), alpha); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:464:20: required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Ref, 0, Eigen::OuterStride<> >; Lhs = Eigen::Ref, 0, Eigen::OuterStride<> >; Rhs = Eigen::Ref, 0, Eigen::OuterStride<> >]’ 464 | scaleAndAddTo(dst, lhs, rhs, Scalar(-1)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, false>, Eigen::Ref, 0, Eigen::OuterStride<> >, 0>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, false>, Eigen::Ref, 0, Eigen::OuterStride<> >, 0> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, false>, Eigen::Ref, 0, Eigen::OuterStride<> >, 0> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0, Eigen::OuterStride<> >, 1, -1, false>, Eigen::Ref, 0, Eigen::OuterStride<> >, 0, 7>’ 120 | class dense_product_base | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0, Eigen::OuterStride<> >, 1, -1, false>, Eigen::Ref, 0, Eigen::OuterStride<> >, 0, Eigen::Dense>’ 152 | class ProductImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0, Eigen::OuterStride<> >, 1, -1, false>, Eigen::Ref, 0, Eigen::OuterStride<> >, 0>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, false>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, false>, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 1, -1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, 1, -1, false, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, false> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, false> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from ‘struct Eigen::internal::plain_object_eval, 0, Eigen::OuterStride<> >, 1, -1, false>, Eigen::Dense>’ 372 | typedef typename plain_matrix_type_dense::XprKind, evaluator::Flags>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45: required from ‘struct Eigen::internal::generic_product_impl, 0, Eigen::OuterStride<> >, 1, -1, false>, Eigen::Ref, 0, Eigen::OuterStride<> >, Eigen::DenseShape, Eigen::DenseShape, 7>’ 369 | typedef typename nested_eval::type LhsNested; | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:486:24: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Ref, 0, Eigen::OuterStride<> >; Lhs = Eigen::Ref, 0, Eigen::OuterStride<> >; Rhs = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double]’ 485 | return internal::generic_product_impl | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 | ::scaleAndAddTo(dst_vec, a_lhs.row(0), a_rhs, alpha); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:464:20: required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Ref, 0, Eigen::OuterStride<> >; Lhs = Eigen::Ref, 0, Eigen::OuterStride<> >; Rhs = Eigen::Ref, 0, Eigen::OuterStride<> >]’ 464 | scaleAndAddTo(dst, lhs, rhs, Scalar(-1)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 2, Eigen::Stride<0, 0> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 2, Eigen::Stride<0, 0> >, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 2, Eigen::Stride<0, 0> >, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 2, Eigen::Stride<0, 0> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 2, Eigen::Stride<0, 0> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 2, Eigen::Stride<0, 0> >, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> >, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:296:40: required from ‘static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; Dest = Eigen::Block, -1, 1, false>; typename Dest::Scalar = double]’ 296 | dest.matrix() += actualAlpha * MappedDest(actualDestPtr, dest.size()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::OuterStride<> >’ 94 | template class Map | ^~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:39:18: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, 1, -1, true, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, Eigen::Dense>’ 118 | template class TransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’ 52 | template class Transpose | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:78:57: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ 94 | template class Map | ^~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:78:73: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:78:72: required from ‘static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 6; bool Conjugate = false]’ 78 | rhs[i] -= (cjLhs.row(i).segment(s,k).transpose().cwiseProduct(Map >(rhs+s,k))).sum(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:73:12: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, false> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:274:18: required from ‘void Eigen::internal::outer_product_selector_run(Dst&, const Lhs&, const Rhs&, const Func&, const false_type&) [with Dst = Eigen::Block, 0, Eigen::OuterStride<> >, -1, -1, false>; Lhs = Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>; Rhs = Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, false>; Func = generic_product_impl, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, false>, Eigen::DenseShape, Eigen::DenseShape, 5>::sub]’ 274 | evaluator rhsEval(rhs); | ^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:329:41: required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, 0, Eigen::OuterStride<> >, -1, -1, false>; Lhs = Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>; Rhs = Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, false>]’ 329 | internal::outer_product_selector_run(dst, lhs, rhs, sub(), is_row_major()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42: required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, 0, Eigen::OuterStride<> >, -1, -1, false>; Lhs = Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>; Rhs = Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, false>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, false>, 0>]’ 178 | generic_product_impl::subTo(dst, src.lhs(), src.rhs()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 0, Eigen::OuterStride<> >, -1, -1, false>; Src = Eigen::Product, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, false>, 0>; Func = sub_assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:59:31: required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, false>, 0>; ExpressionType = Eigen::Block, 0, Eigen::OuterStride<> >, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ 59 | call_assignment_no_alias(m_expression, other.derived(), internal::sub_assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:400:77: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, -1, false>, -1, 1, true>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, -1, false>, -1, 1, true>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, -1, false>, -1, 1, true>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, -1, -1, false>, -1, 1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, -1, -1, false>, -1, 1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, -1, -1, false>, -1, 1, true>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:280:48: required from ‘void Eigen::internal::outer_product_selector_run(Dst&, const Lhs&, const Rhs&, const Func&, const false_type&) [with Dst = Eigen::Block, 0, Eigen::OuterStride<> >, -1, -1, false>; Lhs = Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>; Rhs = Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, false>; Func = generic_product_impl, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, false>, Eigen::DenseShape, Eigen::DenseShape, 5>::sub]’ 280 | func(dst.col(j), rhsEval.coeff(Index(0),j) * actual_lhs); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:329:41: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, Eigen::Ref, 0, Eigen::OuterStride<> >, 1>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, Eigen::Ref, 0, Eigen::OuterStride<> >, 1> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, Eigen::Ref, 0, Eigen::OuterStride<> >, 1> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0, Eigen::OuterStride<> >, Eigen::Ref, 0, Eigen::OuterStride<> >, 1, 8>’ 120 | class dense_product_base | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0, Eigen::OuterStride<> >, Eigen::Ref, 0, Eigen::OuterStride<> >, 1, Eigen::Dense>’ 152 | class ProductImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0, Eigen::OuterStride<> >, Eigen::Ref, 0, Eigen::OuterStride<> >, 1>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:462:68: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, true>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, true>, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, true>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, true, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true>, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false> >, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false>, 1, -1, false> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false>, 1, -1, false> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, -1, -1, false>, 1, -1, false>, Eigen::Dense>’ 118 | template class TransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, -1, -1, false>, 1, -1, false> >’ 52 | template class Transpose | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true>, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, -1, false>, 1, -1, false>; U = Eigen::Block, -1, 1, false>, -1, 1, true>; ResScalar = double]’ 50 | return a.transpose().template binaryExpr(b).sum(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, 1, false> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = div_assign_op]’ 780 | DstEvaluatorType dstEvaluator(dst); | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = Eigen::internal::div_assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = div_assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = div_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ 858 | call_assignment_no_alias(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:28: required from ‘Derived& Eigen::DenseBase::operator/=(const Scalar&) [with Derived = Eigen::Block, 1, 1, false>; Scalar = double]’ 41 | internal::call_assignment(this->derived(), PlainObject::Constant(rows(),cols(),other), internal::div_assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:599:18: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, false> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, false> >, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, false> >, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, false> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, false> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 0, Eigen::OuterStride<> >, 1, -1, false>, Eigen::Dense>’ 118 | template class TransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> > >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> > >, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> > > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> > > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 0, Eigen::OuterStride<> >, Eigen::Dense>’ 118 | template class TransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 0, Eigen::OuterStride<> > >’ 52 | template class Transpose | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:26: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, false> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, false> >, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, false> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, false> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 0, Eigen::OuterStride<> >, 1, -1, false>, Eigen::Dense>’ 118 | template class TransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, false> >’ 52 | template class Transpose | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:43: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’ 1043 | CoeffReadCost = evaluator::CoeffReadCost, | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, Eigen::internal::IndexBased, double>’ 311 | CoeffReadCost = evaluator::CoeffReadCost, | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’ 90 | struct evaluator : public unary_evaluator | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, Eigen::internal::IndexBased, double>’ 311 | CoeffReadCost = evaluator::CoeffReadCost, | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’ 90 | struct evaluator : public unary_evaluator | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ 739 | CoeffReadCost = int(evaluator::CoeffReadCost) + int(evaluator::CoeffReadCost) + int(functor_traits::Cost), | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::Matrix >, -1, 1, true> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Matrix >, -1, 1, true> >’ 357 | class redux_evaluator : public internal::evaluator<_XprType> | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, const Eigen::Matrix >, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ 414 | ThisEvaluator thisEval(derived()); | ^~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Block, const Eigen::Matrix >, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ 463 | return derived().redux(Eigen::internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:114:1: required from ‘ResultType Eigen::internal::member_sum::operator()(const XprType&) const [with XprType = Eigen::Block, const Eigen::Matrix >, -1, 1, true>; ResultType = double; Scalar = double]’ 97 | { return mat.MEMBER(); } \ | ~~~~~~~~~~^~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:183:21: required from ‘const Eigen::internal::evaluator >::Scalar Eigen::internal::evaluator >::coeff(Eigen::Index) const [with ArgType = const Eigen::CwiseUnaryOp, const Eigen::Matrix >; MemberOp = Eigen::internal::member_sum; int Direction = 0; Scalar = double; Eigen::Index = long int]’ 183 | return m_functor(m_arg.template subVector(index)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:177:17: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, true> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, true> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, true> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, true>, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, true> >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>; U = Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, true>; ResScalar = double]’ 50 | return a.transpose().template binaryExpr(b).sum(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true> >, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true>, Eigen::Dense>’ 118 | template class TransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true> >’ 52 | template class Transpose | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true> >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true>; U = Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>; ResScalar = double]’ 50 | return a.transpose().template binaryExpr(b).sum(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, false> >, -1, 1, true>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, false> >, -1, 1, true>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, false> >, -1, 1, true>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, false> >, -1, 1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, false> >, -1, 1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 1, -1, false> >, -1, 1, true>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, 1, false>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 1, 1, false>, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, 1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, 1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, 1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 1, 1, false, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, -1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’ 311 | CoeffReadCost = evaluator::CoeffReadCost, | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> > >’ 90 | struct evaluator : public unary_evaluator | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> > >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ 739 | CoeffReadCost = int(evaluator::CoeffReadCost) + int(evaluator::CoeffReadCost) + int(functor_traits::Cost), | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false>, -1, 1, true> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, -1, 1, false>, -1, 1, true> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ 739 | CoeffReadCost = int(evaluator::CoeffReadCost) + int(evaluator::CoeffReadCost) + int(functor_traits::Cost), | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> > >’ 722 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> > >’ 357 | class redux_evaluator : public internal::evaluator<_XprType> | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, 1, false>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ 414 | ThisEvaluator thisEval(derived()); | ^~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_rhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper; int nr = 4; bool Conjugate = false; bool PanelMode = false]’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:195:21: required from ‘static void Eigen::internal::general_matrix_matrix_product::run(Index, Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, ResScalar, Eigen::internal::level3_blocking&, Eigen::internal::GemmParallelInfo*) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 0; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; ResScalar = double]’ 195 | pack_rhs(blockB, rhs.getSubMapper(k2,j2), actual_kc, actual_nc); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:230:14: required from ‘void Eigen::internal::gemm_functor::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo*) const [with Scalar = double; Index = long int; Gemm = Eigen::internal::general_matrix_matrix_product; Lhs = Eigen::Ref, 0, Eigen::OuterStride<> >; Rhs = Eigen::Ref, 0, Eigen::OuterStride<> >; Dest = Eigen::Ref, 0, Eigen::OuterStride<> >; BlockingType = Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false>]’ 230 | Gemm::run(rows, cols, m_lhs.cols(), | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 231 | &m_lhs.coeffRef(row,0), m_lhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | &m_rhs.coeffRef(0,col), m_rhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 | (Scalar*)&(m_dest.coeffRef(row,col)), m_dest.innerStride(), m_dest.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 | m_actualAlpha, m_blocking, info); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/Parallelizer.h:114:7: required from ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool) [with bool Condition = true; Functor = gemm_functor, Eigen::Ref, 0, Eigen::OuterStride<> >, Eigen::Ref, 0, Eigen::OuterStride<> >, Eigen::Ref, 0, Eigen::OuterStride<> >, gemm_blocking_space<0, double, double, -1, -1, -1, 1, false> >; Index = long int]’ 114 | func(0,rows, 0,cols); | ~~~~^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:509:9: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Ref, 0, Eigen::OuterStride<> >; Lhs = Eigen::Ref, 0, Eigen::OuterStride<> >; Rhs = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double]’ 508 | internal::parallelize_gemm<(Dest::MaxRowsAtCompileTime>32 || Dest::MaxRowsAtCompileTime==Dynamic)> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 | (GemmFunctor(lhs, rhs, dst, actualAlpha, blocking), a_lhs.rows(), a_rhs.cols(), a_lhs.cols(), Dest::Flags&RowMajorBit); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:464:20: required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Ref, 0, Eigen::OuterStride<> >; Lhs = Eigen::Ref, 0, Eigen::OuterStride<> >; Rhs = Eigen::Ref, 0, Eigen::OuterStride<> >]’ 464 | scaleAndAddTo(dst, lhs, rhs, Scalar(-1)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2459:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 2459 | PacketBlock kernel; | ^~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ 1043 | CoeffReadCost = evaluator::CoeffReadCost, | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ 739 | CoeffReadCost = int(evaluator::CoeffReadCost) + int(evaluator::CoeffReadCost) + int(functor_traits::Cost), | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’ 722 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ 739 | CoeffReadCost = int(evaluator::CoeffReadCost) + int(evaluator::CoeffReadCost) + int(functor_traits::Cost), | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’ 722 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >; Functor = sub_assign_op]’ 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; Eigen::Index = long int]’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >; Scalar = double]’ 243 | const Index alignedStart = internal::first_default_aligned(xpr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; typename Eigen::internal::traits::Scalar = double]’ 418 | return internal::redux_impl::run(thisEval, func, derived()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; typename Eigen::internal::traits::Scalar = double]’ 463 | return derived().redux(Eigen::internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:78:127: required from ‘static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 6; bool Conjugate = false]’ 78 | rhs[i] -= (cjLhs.row(i).segment(s,k).transpose().cwiseProduct(Map >(rhs+s,k))).sum(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:73:12: required from ‘static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Transpose >; Rhs = Eigen::Matrix; int Side = 1; int Mode = 6]’ 71 | triangular_solve_vector | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | ::run(actualLhs.cols(), actualLhs.data(), actualLhs.outerStride(), actualRhs); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:182:21: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Block, const Eigen::Matrix >, -1, 1, true>; Eigen::Index = long int]’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::Block, const Eigen::Matrix >, -1, 1, true>; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix >, -1, 1, true> >; Scalar = double]’ 243 | const Index alignedStart = internal::first_default_aligned(xpr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, const Eigen::Matrix >, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ 418 | return internal::redux_impl::run(thisEval, func, derived()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Block, const Eigen::Matrix >, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ 463 | return derived().redux(Eigen::internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:114:1: required from ‘ResultType Eigen::internal::member_sum::operator()(const XprType&) const [with XprType = Eigen::Block, const Eigen::Matrix >, -1, 1, true>; ResultType = double; Scalar = double]’ 97 | { return mat.MEMBER(); } \ | ~~~~~~~~~~^~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:183:21: required from ‘const Eigen::internal::evaluator >::Scalar Eigen::internal::evaluator >::coeff(Eigen::Index) const [with ArgType = const Eigen::CwiseUnaryOp, const Eigen::Matrix >; MemberOp = Eigen::internal::member_sum; int Direction = 0; Scalar = double; Eigen::Index = long int]’ 183 | return m_functor(m_arg.template subVector(index)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:177:17: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, true> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, true> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ 739 | CoeffReadCost = int(evaluator::CoeffReadCost) + int(evaluator::CoeffReadCost) + int(functor_traits::Cost), | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, true> > >’ 722 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, true> > >’ 357 | class redux_evaluator : public internal::evaluator<_XprType> | ^~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ 414 | ThisEvaluator thisEval(derived()); | ^~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true> >, Eigen::internal::IndexBased, double>’ 311 | CoeffReadCost = evaluator::CoeffReadCost, | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true> > >’ 90 | struct evaluator : public unary_evaluator | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true> > >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, false>, 1, -1, true> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ 739 | CoeffReadCost = int(evaluator::CoeffReadCost) + int(evaluator::CoeffReadCost) + int(functor_traits::Cost), | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true> > >’ 41 | template class DenseBase | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true> >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:606:52: required from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Ref, 0, Eigen::OuterStride<> >; Rhs = Eigen::Ref, 0, Eigen::OuterStride<> >; int ProductTag = 8; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Ref, 0, Eigen::OuterStride<> >; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Ref, 0, Eigen::OuterStride<> >; CoeffReturnType = double; Eigen::Index = long int]’ 606 | return (m_lhs.row(row).transpose().cwiseProduct( m_rhs.col(col) )).sum(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:654:63: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, -1, false>, -1, 1, true> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::OuterStride<> >, -1, -1, false>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >; Functor = sub_assign_op]’ 780 | DstEvaluatorType dstEvaluator(dst); | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::OuterStride<> >, -1, -1, false>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 0, Eigen::OuterStride<> >, -1, -1, false>, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >; Func = sub_assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 0, Eigen::OuterStride<> >, -1, -1, false>, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >; Func = sub_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ 858 | call_assignment_no_alias(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >; Derived = Eigen::Block, 0, Eigen::OuterStride<> >, -1, -1, false>, -1, 1, true>]’ 164 | call_assignment(derived(), other.derived(), internal::sub_assign_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:305:153: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, 1, false> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, 1, false>; SrcXprType = Eigen::Block, 1, 1, false>; Functor = assign_op]’ 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, 1, false>; SrcXprType = Eigen::Block, 1, 1, false>; Functor = Eigen::internal::assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 1, 1, false>; Src = Eigen::Block, 1, 1, false>; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 1, 1, false>; Src = Eigen::Block, 1, 1, false>; Func = assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ 858 | call_assignment_no_alias(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, 1, 1, false>; Src = Eigen::Block, 1, 1, false>]’ 836 | call_assignment(dst, src, internal::assign_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>; SrcXprType = Eigen::Block, -1, 1, true>; Functor = swap_assign_op]’ 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>; SrcXprType = Eigen::Block, -1, 1, true>; Functor = Eigen::internal::swap_assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::Block, -1, 1, true>; Func = swap_assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::Block, -1, 1, true>; Func = swap_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ 858 | call_assignment_no_alias(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:424:22: required from ‘void Eigen::DenseBase::swap(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; Derived = Eigen::Block, -1, 1, true>]’ 424 | call_assignment(derived(), other.const_cast_derived(), internal::swap_assign_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:1129:51: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ./CGAL/NewKernel_d/Kernel_d_interface.h:167:94: required from ‘CGAL::Kernel_d_interface::FT CGAL::Kernel_d_interface::Compute_squared_radius_d::operator()(I, I) const [with I = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Base_ = CGAL::Cartesian_wrap, CGAL::Epick_d >; CGAL::Kernel_d_interface::FT = double]’ 167 | return typename Get_functor::type(this->kernel())(b,e); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./gudhi/Alpha_complex/Alpha_kernel_d.h:73:53: required from ‘Gudhi::alpha_complex::Alpha_kernel_d::FT Gudhi::alpha_complex::Alpha_kernel_d::get_squared_radius(PointIterator, PointIterator) const [with PointIterator = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >; Kernel = CGAL::Epick_d; FT = double]’ 73 | return kernel_.compute_squared_radius_d_object()(begin, end); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ./gudhi/Alpha_complex.h:339:38: required from ‘auto Gudhi::alpha_complex::Alpha_complex::radius(SimplicialComplexForAlpha&, typename SimplicialComplexForAlpha::Simplex_handle) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Kernel = CGAL::Epick_d; bool Weighted = false; typename SimplicialComplexForAlpha::Simplex_handle = boost::container::vec_iterator > >*, false>]’ 339 | return kernel_.get_squared_radius(v.cbegin(), v.cend()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./gudhi/Alpha_complex.h:438:43: required from ‘bool Gudhi::alpha_complex::Alpha_complex::create_complex(SimplicialComplexForAlpha&, Filtration_value, bool, bool) [with SimplicialComplexForAlpha = Gudhi::Simplex_tree<>; Filtration_value = double; Kernel = CGAL::Epick_d; bool Weighted = false]’ 438 | auto const& sqrad = radius(complex, f_simplex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ./tdautils/gudhiUtils.h:390:45: required from ‘SimplexTree AlphaComplexFiltrationGudhi(const RealMatrix&, bool, Print&) [with SimplexTree = Gudhi::Simplex_tree<>; RealMatrix = Rcpp::Matrix<14>; Print = void(const char*, ...)]’ 390 | alpha_complex_from_points.create_complex(simplex); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ diag.cpp:492:59: required from here 492 | AlphaComplexFiltrationGudhi< Gudhi::Simplex_tree<> >( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 493 | X, printProgress, Rprintf)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ In file included from /usr/include/R/R.h:73, from diag.cpp:2: /usr/local/lib/R/library/Rcpp/include/Rcpp/exceptions/cpp11/exceptions.h: In function ‘Rcpp::Rf_warning(char const*, char const*&&)void’: /usr/include/R/R_ext/Error.h:85:17: warning: infinite recursion detected [-Winfinite-recursion] 85 | #define warning Rf_warning | ^~~~~~~~~~ In file included from /usr/local/lib/R/library/Rcpp/include/Rcpp/exceptions.h:180, from /usr/local/lib/R/library/Rcpp/include/RcppCommon.h:130, from /usr/local/lib/R/library/Rcpp/include/Rcpp.h:27, from diag.cpp:6: /usr/local/lib/R/library/Rcpp/include/Rcpp/exceptions/cpp11/exceptions.h:47:15: note: recursive call 47 | Rf_warning("%s", tfm::format(fmt, std::forward(args)... ).c_str()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o TDA.so RcppExports.o diag.o -lgmp -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build/BUILDROOT/usr/local/lib/R/library/00LOCK-TDA/00new/TDA/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘TDA’ finding HTML links ... done TDA-internal html TDA-package html alphaComplexDiag html alphaComplexFiltration html alphaShapeDiag html alphaShapeFiltration html bootstrapBand html bootstrapDiagram html bottleneck html circleUnif html clusterTree html distFct html dtm html filtrationDiag html funFiltration html gridDiag html gridFiltration html hausdInterval html kde html kernelDist html knnDE html landscape html maxPersistence html multipBootstrap html plot.clusterTree html plot.diagram html plot.maxPersistence html ripsDiag html ripsFiltration html silhouette html sphereUnif html summary.diagram html torusUnif html wasserstein html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TDA) + test -d TDA/src + cd TDA/src + rm -f RcppExports.o diag.o TDA.so + rm -f /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build/BUILDROOT/usr/local/lib/R/library/R.css + find /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build/BUILDROOT/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILD/R-CRAN-TDA-1.9.4-build/BUILDROOT@@g '{}' ';' + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 1.9.4-1.fc42.copr8933184 --unique-debug-suffix -1.9.4-1.fc42.copr8933184.x86_64 --unique-debug-src-base R-CRAN-TDA-1.9.4-1.fc42.copr8933184.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build/TDA find-debuginfo: starting Extracting debug info from 1 files warning: Unsupported auto-load script at offset 0 in section .debug_gdb_scripts of file /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build/BUILDROOT/usr/local/lib/R/library/TDA/libs/TDA.so. Use `info auto-load python-scripts [REGEXP]' to list them. DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-CRAN-TDA-1.9.4-1.fc42.copr8933184.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build/BUILDROOT Handler jar skipped: jar handler requires $SOURCE_DATE_EPOCH to be set Handler gzip skipped: gzip handler requires $SOURCE_DATE_EPOCH to be set Handler zip skipped: zip handler requires $SOURCE_DATE_EPOCH to be set Scanned 62 directories and 381 files, processed 92 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build/SPECPARTS/rpm-debuginfo.specpart Processing files: R-CRAN-TDA-1.9.4-1.fc42.copr8933184.x86_64 Provides: R-CRAN-TDA = 1.9.4-1.fc42.copr8933184 R-CRAN-TDA(x86-64) = 1.9.4-1.fc42.copr8933184 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: R-CRAN-TDA-debugsource-1.9.4-1.fc42.copr8933184.x86_64 Provides: R-CRAN-TDA-debugsource = 1.9.4-1.fc42.copr8933184 R-CRAN-TDA-debugsource(x86-64) = 1.9.4-1.fc42.copr8933184 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-CRAN-TDA-debuginfo-1.9.4-1.fc42.copr8933184.x86_64 Provides: R-CRAN-TDA-debuginfo = 1.9.4-1.fc42.copr8933184 R-CRAN-TDA-debuginfo(x86-64) = 1.9.4-1.fc42.copr8933184 debuginfo(build-id) = c0da8cbb8a38be4cf92413619513a69935131454 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-CRAN-TDA-debugsource(x86-64) = 1.9.4-1.fc42.copr8933184 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build/BUILDROOT Wrote: /builddir/build/RPMS/R-CRAN-TDA-1.9.4-1.fc42.copr8933184.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-TDA-debugsource-1.9.4-1.fc42.copr8933184.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-TDA-debuginfo-1.9.4-1.fc42.copr8933184.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.JtxEOn + umask 022 + cd /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build + test -d /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build + rm -rf /builddir/build/BUILD/R-CRAN-TDA-1.9.4-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Finish: rpmbuild R-CRAN-TDA-1.9.4-1.fc42.copr8933184.src.rpm Finish: build phase for R-CRAN-TDA-1.9.4-1.fc42.copr8933184.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-42-x86_64-1745150703.065754/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-TDA-1.9.4-1.fc42.copr8933184.src.rpm) Config(child) 2 minutes 4 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-TDA-debugsource", "epoch": null, "version": "1.9.4", "release": "1.fc42.copr8933184", "arch": "x86_64" }, { "name": "R-CRAN-TDA-debuginfo", "epoch": null, "version": "1.9.4", "release": "1.fc42.copr8933184", "arch": "x86_64" }, { "name": "R-CRAN-TDA", "epoch": null, "version": "1.9.4", "release": "1.fc42.copr8933184", "arch": "src" }, { "name": "R-CRAN-TDA", "epoch": null, "version": "1.9.4", "release": "1.fc42.copr8933184", "arch": "x86_64" } ] } RPMResults finished