rba_uniprot_proteomics_species {rbioapi} | R Documentation |
Get UniProt Proteomics Metadata
Description
Retrieve information on the available Species proteomics data sources in UniProt.
Usage
rba_uniprot_proteomics_species(...)
Arguments
... |
rbioapi option(s). See |
Details
UniProt categorizes proteomics data sources into three main data categories: PTM (Post-Translational Modification), non-PTM, and HPP (Human Proteome Project); each with corresponding API endpoints, and thus, rbioapi functions.
Value
A data frame with the available species as rows, and the columns indicating the proteomics data sources, separated by three main data categories: PTM (Post-Translational Modification), non-PTM, and HPP (Human Proteome Project)
Corresponding API Resources
"GET https://www.ebi.ac.uk/proteins/api/proteomics/species"
References
The UniProt Consortium , UniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research, 2024;, gkae1010, https://doi.org/10.1093/nar/gkae1010
Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237
See Also
Other "UniProt - Proteomics":
rba_uniprot_proteomics_hpp()
,
rba_uniprot_proteomics_hpp_search()
,
rba_uniprot_proteomics_non_ptm()
,
rba_uniprot_proteomics_non_ptm_search()
,
rba_uniprot_proteomics_ptm()
,
rba_uniprot_proteomics_ptm_search()
Examples
rba_uniprot_proteomics_species()